Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27930 531 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348700 [exp] 627 / 0 AT3G27930 578 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008782 pacid=23177846 polypeptide=Lus10008782 locus=Lus10008782.g ID=Lus10008782.BGIv1.0 annot-version=v1.0 ATGGGGAACCTCATCTCCGCCGCGGAACCGCCACCGCCATCGCCTATGGTGCTCGTCCCACCGCTCTTCGACTTCCCCCCTCTCGCCGCCCGCAACAGAA TGCTGGAGTCGTCGTACAATTTGTTGTTCGGGAAGCTAGCTTTGAAGTGCCTATTCGAGGATTATTTTGAAGAAGCACAACATTTTACTACCAGAATCAT GTTGAAACCAATTGACGATCCTCATGTGGATTTAATTGCAACTGTTTCGGGACCGTTGGATCACAAGCCCGAAGAGAATTTCCACGGAAATGCGTTTTTC CGTTGGCAAAGTGATGTGCATGATCCTCATACCTTCATGGACCTTTATGTATCAAACTGTGATCCTATTCTACGACTGAGATCATGTGCTTTCTATCCGA GGCTTGGATTAGGTGCTTTTGGTGTATTACCGTTATTAATAAGAAAGAGAGTAGCTTCTGAAGATTATGGAGTCATGGGACTGAGATATGGCTCAGAGTG TTTGTCATTTGGAGCCACTGTTTTGCCTTTTGCTTTGAAAGATGAGTTACCAAAACATGCATGGTTTGTTACCAAGATTGGAAAATTATCTGCTGGAGTA CAGTATGAGCCACAATTTGGTAGTACAGACGGCGCCAAGTACAAGAATCTCAAGAACTGGAGTGCTGCACTTGGCTATGGAGTAGGATCAGCGAGCCCCA TAAGCCCCTCATTTAATTTCGGTCTTGAGCTGGCTAGAAGTTCCCAGGTGAGGAATCCTTTTGAAGGAGATGAAGTAGTTGGGATCACAAATTATATTGA CTTTGGATTTGAGTTGCAAGCAAGGGTTGATGATGACAAAGCGTCAAAGGATTTTCCAGACTCCGCCTTCAATGTTGCTGCATCCTGGCAAGCCAATAAG AATTTCCTGTTAAAGGCAAAGATTGGTCCTCTCGCCTCATCATTTGTGTTGGCATTCAAGTCATGGTGGAAACCTTCGTTTACATTCAATGTTACAGCTA CCAGAGATCGAATGACAGGGAAAACAGGGTATGGGTTTGGCATCCGAGTGGAAAATCTTCGAGAAGCCAGCTACCAACGAGCGGATCCAAATTTCATAAT GTTGACGCCAAGCAAGGAGCACTTAGCGGAGGGTATTCTTAAAAATGGTAATCGACCCATGTTCCAAGCTGATGTTAATGCAGAGAACTACGAAGGGTTA CCCAGAGAAATGAGGCCCTATGGGAGGATACTGTAG
AA sequence Show only first row Show all	>Lus10008782 pacid=23177846 polypeptide=Lus10008782 locus=Lus10008782.g ID=Lus10008782.BGIv1.0 annot-version=v1.0 MGNLISAAEPPPPSPMVLVPPLFDFPPLAARNRMLESSYNLLFGKLALKCLFEDYFEEAQHFTTRIMLKPIDDPHVDLIATVSGPLDHKPEENFHGNAFF RWQSDVHDPHTFMDLYVSNCDPILRLRSCAFYPRLGLGAFGVLPLLIRKRVASEDYGVMGLRYGSECLSFGATVLPFALKDELPKHAWFVTKIGKLSAGV QYEPQFGSTDGAKYKNLKNWSAALGYGVGSASPISPSFNFGLELARSSQVRNPFEGDEVVGITNYIDFGFELQARVDDDKASKDFPDSAFNVAASWQANK NFLLKAKIGPLASSFVLAFKSWWKPSFTFNVTATRDRMTGKTGYGFGIRVENLREASYQRADPNFIMLTPSKEHLAEGILKNGNRPMFQADVNAENYEGL PREMRPYGRIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27930			unknown protein		Lus10008782 [exp]	0	1
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	3.2	0.8622
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10013723 [exp]	3.2	0.8690
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	5.7	0.8461
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10016372 [exp]	9.5	0.7977
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	13.0	0.8236
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	13.8	0.8455
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10037073 [exp]	15.5	0.7959
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	17.0	0.7950
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10025361 [exp]	18.2	0.7901
AT3G01380			transferases;sulfuric ester hy...		Lus10039473 [exp]	21.6	0.8119

Compare expression of checked genes

Lus10008782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.