Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G14450 386 / 3e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G26430 325 / 3e-109 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 325 / 3e-109 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT1G54790 283 / 9e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT3G05180 278 / 7e-91 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 260 / 4e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 255 / 3e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 251 / 2e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 251 / 4e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022233 [exp] 504 / 4e-180 AT3G27950 280 / 4e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 382 / 2e-131 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 372 / 1e-127 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 354 / 6e-116 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029638 [exp] 291 / 1e-95 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029980 [exp] 286 / 4e-94 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10036873 [exp] 283 / 9e-94 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029639 [exp] 273 / 8e-89 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10001522 [exp] 252 / 7e-81 AT1G09390 459 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342600 [exp] 406 / 5e-141 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 357 / 2e-121 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G047900 [exp] 343 / 3e-116 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 327 / 4e-110 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 316 / 2e-105 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 308 / 2e-102 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 304 / 6e-101 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 296 / 8e-98 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 292 / 2e-96 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.002G216000 [exp] 281 / 7e-92 AT1G54790 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10008784 pacid=23177855 polypeptide=Lus10008784 locus=Lus10008784.g ID=Lus10008784.BGIv1.0 annot-version=v1.0 ATGGACTGCTTGATGAGGCTACTGCTGCTCCTTGGACTGTTGGGAACTCTGCTCCTGAAAATGGGGACAGATGCAACAACAACAATGGTGAAAGGTAATG ACAAGTTTCACAAGTGCAAGTTCCCGGCAGTATACAACTTCGGCGACTCCAACTCCGATACTGGAGGGAGATCTGCAGCGTTTGGAGAGTTCCCTCCACC CAACGGTGAAACCTTCTTTGGACGTCCTTCAGGGAGAGCTTGTGATGGCCGCCTTATCATAGATTTTATTGCTGAGAGACTGGAGTTTCCATATCTAAGT GCATACCTGGACTCGGTCGGGACAGACTTCAGACATGGTGCAAACTTTGCTACCGGTGGCTCTTCCATTCGTCCAGGTGGTTACAGCCCCTTTGATTTGG GCGTACAGATTTCCCAGTTCAAGCGGTTCAAAACTCATACCAACCAACTTTATCAAAGCCATGTTAGCACCAATGGACTGCGAAATCTGCAAAGGCCAGA TGACTTCTCAACAGCTCTATACACATTGGATATAGGACAGAATGATCTCGCCTTTGGCTTCCAACATTCATCAGTCGAAGAGGTTCAGAAGTCCATACCT GATATTTTGAGCCAGCTTTCCGAGGCAGTGCAGCAACTTTACAAAGAAGGTGCAAGATTCTTCTGGGTGCACAACACAGGACCAATTGGCTGCTTGCCCT ATTCTGTTATATACAACTCGGATCCCGAAAACTTGGACAGAAATGGATGTGTCAGGTCCCACAACGACGTCACCAAGGAGTTCAACAGGCAACTCGAAGA CAAAGTTTACCAGCTTAGGGAAAAGCTTCCTGGTTCAGCTTTCACATATATTGATGTGTATTCAGCCAAGTATCAACTGATTAGCACAGCAACCAATCAA GGTTTCGTTAATCCGATGGAGTTCTGTTGCGGCAGCTACTATGGGTATCACATAGACTGTGGGAAGAAAGCTGTGGTGAATGGAACAGAGTATGGTAATC CGTGCAAGGATCCATCAATGCACGTGAGCTGGGACGGTGTACACTACTCTGAAGCAGCTAATGTGTGGGTGGCAAATAGGATACTAAATGGCAGCCTTTC TCATCCTCCTGTTTCTGTTCAAAAGGCCTGTGGGCACATTTAG
AA sequence Show only first row Show all	>Lus10008784 pacid=23177855 polypeptide=Lus10008784 locus=Lus10008784.g ID=Lus10008784.BGIv1.0 annot-version=v1.0 MDCLMRLLLLLGLLGTLLLKMGTDATTTMVKGNDKFHKCKFPAVYNFGDSNSDTGGRSAAFGEFPPPNGETFFGRPSGRACDGRLIIDFIAERLEFPYLS AYLDSVGTDFRHGANFATGGSSIRPGGYSPFDLGVQISQFKRFKTHTNQLYQSHVSTNGLRNLQRPDDFSTALYTLDIGQNDLAFGFQHSSVEEVQKSIP DILSQLSEAVQQLYKEGARFFWVHNTGPIGCLPYSVIYNSDPENLDRNGCVRSHNDVTKEFNRQLEDKVYQLREKLPGSAFTYIDVYSAKYQLISTATNQ GFVNPMEFCCGSYYGYHIDCGKKAVVNGTEYGNPCKDPSMHVSWDGVHYSEAANVWVANRILNGSLSHPPVSVQKACGHI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	0	1
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10013605 [exp]	5.4	0.7768
AT5G11900			Translation initiation factor ...		Lus10013512 [exp]	7.4	0.7325
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10010463 [exp]	8.2	0.7549
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	9.9	0.7500
AT5G09680		RLF	reduced lateral root formation...		Lus10019013 [exp]	14.7	0.7496
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Lus10025790 [exp]	15.6	0.6873
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10041518 [exp]	15.9	0.6625
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10015295 [exp]	18.0	0.7313
AT2G38710			AMMECR1 family (.1.2)		Lus10029751 [exp]	22.8	0.7045
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Lus10002203 [exp]	23.4	0.6230

Compare expression of checked genes

Lus10008784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.