Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15802 96 / 4e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022232 [exp] 198 / 2e-67 AT5G15802 105 / 1e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G099600 [exp] 147 / 4e-47 AT5G15802 117 / 1e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008785 pacid=23177870 polypeptide=Lus10008785 locus=Lus10008785.g ID=Lus10008785.BGIv1.0 annot-version=v1.0 ATGGCAAATATAACGGAAAGTGAATTGGCCGGATTTGGAGTGGGAACGTTGCTATTAGTGGCCACCATTGCTGCTCCTAAACTCGATGCCCTCATCTCTG CTTCTCAGAGGAGCTCCCTAGGGATGTGCAAGAGATGCGGGGACTTGAGGATGATAGCGTGCTCAAACTGTAAAGGAACTGGATCAGTGAAAGCAGGTGA GCCATTTCTAAGCTTCAGATTCCTAGATGACTTGTATCAGTCAATTGGCGGTGAACAACAAGTAAGCCGTGTCAACTGTAGTAAATGCAAAGCCAAGGGT CACTTCACCTTAGACTTCATAGATCTTGGTGAGATTCTTGCCTAG
AA sequence Show only first row Show all	>Lus10008785 pacid=23177870 polypeptide=Lus10008785 locus=Lus10008785.g ID=Lus10008785.BGIv1.0 annot-version=v1.0 MANITESELAGFGVGTLLLVATIAAPKLDALISASQRSSLGMCKRCGDLRMIACSNCKGTGSVKAGEPFLSFRFLDDLYQSIGGEQQVSRVNCSKCKAKG HFTLDFIDLGEILA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15802			unknown protein		Lus10008785 [exp]	0	1
AT2G38570			unknown protein		Lus10014180 [exp]	4.0	0.9039
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10028526 [exp]	6.9	0.8782
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	8.1	0.8890
AT2G46220			Uncharacterized conserved prot...		Lus10012651 [exp]	8.2	0.8604
AT2G46220			Uncharacterized conserved prot...		Lus10010135 [exp]	8.6	0.8586
AT5G38510			Rhomboid-related intramembrane...		Lus10023145 [exp]	10.9	0.8822
AT5G38510			Rhomboid-related intramembrane...		Lus10000628 [exp]	11.0	0.8828
AT1G07700			Thioredoxin superfamily protei...		Lus10032343 [exp]	11.4	0.9006
AT3G17930			unknown protein		Lus10042280 [exp]	13.6	0.8884
AT5G61820			unknown protein		Lus10015933 [exp]	18.1	0.8336

Compare expression of checked genes

Lus10008785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.