Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27960 734 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G27500 623 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G10840 573 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G31240 148 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37590 43 / 0.001 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022231 [exp] 1292 / 0 AT3G27960 788 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002376 [exp] 706 / 0 AT1G27500 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042120 [exp] 696 / 0 AT1G27500 828 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017304 [exp] 576 / 0 AT4G10840 932 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003201 [exp] 574 / 0 AT4G10840 927 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033883 [exp] 130 / 3e-31 AT2G31240 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003563 [exp] 127 / 3e-30 AT2G31240 734 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094700 [exp] 813 / 0 AT3G27960 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G075300 [exp] 703 / 0 AT1G27500 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G080100 [exp] 682 / 0 AT1G27500 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G087800 [exp] 603 / 0 AT4G10840 864 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G143200 [exp] 583 / 0 AT4G10840 843 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G173400 [exp] 525 / 7e-180 AT4G10840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G100400 [exp] 525 / 9e-180 AT4G10840 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G222900 [exp] 160 / 3e-41 AT2G31240 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G085200 [exp] 45 / 0.0002 AT5G37590 530 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008786 pacid=23177858 polypeptide=Lus10008786 locus=Lus10008786.g ID=Lus10008786.BGIv1.0 annot-version=v1.0 ATGCCCGGACTGCCTATCATGGGATCAGAAGGAGAAAATGGCGGGACAGAGCAGGGTAACATTAATGGCAAGCAAAAAACAGCAGAAAGCACGCTGATGA GTCAACGCAGCGGTGACTCGATTGATCTAGCCATTGACGGCGTTATCGATACCTCCATAGAGCAGCTATATCACAACGTCTGTGAGATGCAGGAGAGCTC TGATGATCCCTCCCCTTCAAGGAGAAGCTTCTTCTCTTACGGCGAAGAGTCGAGGATCGACTCCGAATTGTGCCATCTTGTCGGAGACGTCGGGATTATG GAGATGATGATGACAAAAGAGGGTGTTGCGACAGAGAAGGCGGATAAAAATAGTGAAAATAACGGCGGCGTTGAACATAATTTGCCTTTTACAGGCAAGA AGATCAGGAGGAGCCAGGCTGAGAGCATTCAAAAGCAGCTTTTCAGGCTGCAATCCGAGTTTGGTGATTCTGAGAAAAAGCACCAAACTTTGAGAAGGTC TAGGCCTCCAAATTCAAGGAGGCCAATTAGGAAACTTCAGATTACAAATATGGCTGATGATGATCATCATCAGCTTGTTGGACCGTTACTGCTGAAACAA ACAAGAGAGATGATCTCCTCGGGGGAGAACCCGAAACGGGTTCTCAAGTTTGCAATCAGAGCCGCCAAATCATTCGAGGAACATTCAAACGACGACGGGG AAGCACCGAATTTGGAACATGTCATGTCATTACATGTCCTGGCATCAATACATTGTAGCTTAGGGCAGTACAACGAGGCCATCCCTGTTCTTGAAAGGTC AATACAAATTCCGGTCATAGAATACGGCCAGGATCATTTTCTAGCCAAGTTTGCAGGATGCATGCAGTTAGGTGACACTTATTCAATGTTGGGACAAATT GAGAATTCAATATTGTGTTACACAGCCGGTTTGGAGATCCAGAAGCAAGTCTTGGGTGAAATGGATCCTCGAGTTGGCGAAACATGCCGGTATGTAGCCG AGGCTCATGTCCAGGCATTACAATTTGACGAGGCTGCAAAAGTTTGCCAATTGGCGCTTGACATCTACAGGGAGAAAGGAGGAGGTGCTTCGTCGATGGA GGAAGCCGCGGATAGGAGACTGATGGGGCTAATCTGCGATGCGAGGGGAGATTATGATGCTGCCCTCGAGCATTATGTTCTTGCAAGCATGTCAATGGCA GCAAATGGCCAGGAGATGGAAGTTGCTACTATTGATTGCAGCATTGGAGATGCGTATCTGTCATTGGCGCGATATGATGAGGCTGTATTTGCGTACAAGA AGGCACTTGCGAGTTTCAAATCAAGCAAAGAAGGAGAGAAGTACAGTGCATCAGTTGCATCTGTGTTTGTGAGGCTGGCTGATCTGTATAACAAGATTGG AAAATATAAGGACTCGAAATCCTACTGCGAGAATGCTCTCAGGATCTATGAAAAGCGTGACAGGATAATAGCGGCTGAGGATATAGCCAGTGGATTTATT GACATCGCTGCGATATACCAGTCCATGGATGAGTTTGATCAGGCTATCAAGTTGCTGAGGAAGGCACTGAAGAAGATAAATAATAATAATAATGGAGATG ATGATAATGATGATGTTTCGGGGCAGCGAAGTACAGTCGCTGGGATCGAAGCTCAGATCGGGGTTATGCATTACATGACGGGGAATTTCCCCGAGTCGTA CAGAACGTTCAAGAGCGCGATATCAAAGATGAGAGCGAGCGGGGAGAAGAAATCGGCCATGTTCGGGATCGCGCTGAACCAAATGGGGTTAGCCTGCGTG CAGCTTTACGCAATCAACGAGGCTGCTGATCTGTTTGAAGAAGCTAGGACCATTTTGGAGAAGGAATATGGACCATATCATCCGGACACCTTAGCTGTCT ACAGCAATCTAGCAGGAACTTATGATGCTATGGGGAGATTGGATGATGCAATTGAGATATTGGAGAACGTGGTTAGAATGAGGGAACAGAAGCTGGGAAC AGCAAATCCAGAAGTGGTGGATGAGAAGAGGAGGCTAGGTGAGCTGCTGAAAGAAGCTGGAAGGACAAGGGACAGAGAATCTATAGCTTTGCTAGCTTTC CTTGATACTCATGAAGTTGTTGAGAGGGCTGAAATGATTGAGCTAGCTTACTGA
AA sequence Show only first row Show all	>Lus10008786 pacid=23177858 polypeptide=Lus10008786 locus=Lus10008786.g ID=Lus10008786.BGIv1.0 annot-version=v1.0 MPGLPIMGSEGENGGTEQGNINGKQKTAESTLMSQRSGDSIDLAIDGVIDTSIEQLYHNVCEMQESSDDPSPSRRSFFSYGEESRIDSELCHLVGDVGIM EMMMTKEGVATEKADKNSENNGGVEHNLPFTGKKIRRSQAESIQKQLFRLQSEFGDSEKKHQTLRRSRPPNSRRPIRKLQITNMADDDHHQLVGPLLLKQ TREMISSGENPKRVLKFAIRAAKSFEEHSNDDGEAPNLEHVMSLHVLASIHCSLGQYNEAIPVLERSIQIPVIEYGQDHFLAKFAGCMQLGDTYSMLGQI ENSILCYTAGLEIQKQVLGEMDPRVGETCRYVAEAHVQALQFDEAAKVCQLALDIYREKGGGASSMEEAADRRLMGLICDARGDYDAALEHYVLASMSMA ANGQEMEVATIDCSIGDAYLSLARYDEAVFAYKKALASFKSSKEGEKYSASVASVFVRLADLYNKIGKYKDSKSYCENALRIYEKRDRIIAAEDIASGFI DIAAIYQSMDEFDQAIKLLRKALKKINNNNNGDDDNDDVSGQRSTVAGIEAQIGVMHYMTGNFPESYRTFKSAISKMRASGEKKSAMFGIALNQMGLACV QLYAINEAADLFEEARTILEKEYGPYHPDTLAVYSNLAGTYDAMGRLDDAIEILENVVRMREQKLGTANPEVVDEKRRLGELLKEAGRTRDRESIALLAF LDTHEVVERAEMIELAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	0	1
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	1.0	0.9352
AT5G46600			Aluminium activated malate tra...		Lus10022030 [exp]	2.0	0.9280
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031900 [exp]	2.4	0.9267
AT3G14170			Plant protein of unknown funct...		Lus10008137 [exp]	4.5	0.8943
AT3G26720			Glycosyl hydrolase family 38 p...		Lus10012578 [exp]	5.3	0.9003
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10008737 [exp]	6.0	0.9110
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	7.1	0.8965
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	7.2	0.8789
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10012797 [exp]	8.0	0.9178
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	9.3	0.8766

Compare expression of checked genes

Lus10008786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.