Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27970 558 / 0 Exonuclease family protein (.1) AT5G40310 540 / 0 C2H2ZnF Exonuclease family protein (.1) AT2G48100 303 / 2e-101 C2H2ZnF Exonuclease family protein (.1.2.3.4) AT3G15080 100 / 3e-24 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50100 72 / 9e-14 SDN1 small RNA degrading nuclease 1 (.1) AT5G67240 62 / 2e-10 SDN3 small RNA degrading nuclease 3 (.1.2) AT5G05540 53 / 1e-07 SDN2 small RNA degrading nuclease 2 (.1.2) AT5G25800 45 / 7e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50090 44 / 7e-05 Exonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022230 [exp] 694 / 0 AT3G27970 585 / 0.0 Exonuclease family protein (.1) Lus10029642 [exp] 327 / 1e-110 AT2G48100 382 / 3e-132 Exonuclease family protein (.1.2.3.4) Lus10042687 [exp] 324 / 2e-109 AT2G48100 362 / 2e-124 Exonuclease family protein (.1.2.3.4) Lus10000997 [exp] 99 / 2e-23 AT3G15080 325 / 4e-112 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011026 [exp] 96 / 1e-22 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019321 [exp] 58 / 4e-09 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011505 [exp] 57 / 1e-08 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 54 / 9e-08 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10042779 [exp] 44 / 0.0002 AT5G25800 712 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G073300 [exp] 604 / 0 AT3G27970 577 / 0.0 Exonuclease family protein (.1) Potri.002G215700 [exp] 335 / 4e-114 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4) Potri.001G373500 [exp] 97 / 5e-23 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G048000 [exp] 54 / 6e-08 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2) Potri.005G186600 [exp] 49 / 4e-06 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10008787 pacid=23177847 polypeptide=Lus10008787 locus=Lus10008787.g ID=Lus10008787.BGIv1.0 annot-version=v1.0 ATGGACTACAGAAATGACTCATCTGAGAACTCAAGGAATAAGTGTGCAGCGTGCTTTAGGCAGTTCAACAAAAAGGAACACCTAGTGGAGCACATGAGGA TCTCCTTTCACTCAGTGCATGAACCCAAGTGTGGAATCTGTAAGAAGCACTGCAGATCATTTGAGTCCCTGAGGGAGCATCTCATCGGACCATTACCAAA GCAAGAGTGCAAGAACATTTTCAACGTCCGGGGATGCAGATTTTGTCTGACCATTCTTGACAGCTCAAATGCCCGCAGGGCTCACCAAGATAGATGTCAG TTCCCTAACGTTAATGCGGGACTGCTTGCTCGAGTGGCTACTCTAGGCTTGCGCGACAGCTTGAGTACAGAAAGTGGCTACTCCAGAGGGACACAAGTTG TTGCACTAGCGTGTAAGATGGTTGGAGGAGGCAGTGATGGCTCCCTCGATCTCTGTGGGAGGGTTTGCCTCGTCGACGAAAACGAAAACATTCTTTTCCA TTCCTATGTCAAACCACCAATTCCAGTCACCAATTGCAGGTACGAAACCACAGGGATAAGGCCAGAATATTTGAGGGATGCAGTCCCACTAAGACAGGTG CAAAAGAAGATTCAAGATTTCCTAAGCAATGGTGAGCCCATGTGGAAAATTAGACCAAGAGGAGGAAGAGCTAGGATTCTCGTGGGTCATGGATTGGACC ACGACCTTGACCGCCTTCAAGTGGAATACCCAGCTGTGATGATCAGGGACACAGCAAAGTACCCTCCATTAATGAAAACAAGCAAGCTTAGCAACTCACT CAAGTACCTAACACAGGCCTATCTCGGGTATGACATTCAAATGGGAACCCAAGACCCATATGAAGATTGTGTGGCAACTATGAGACTGTACATGAGGATG AGATCTCAACGACATGGTGCAGAGGATTATCCAGTTGCCACTGATCCACAGAACCGTAACAATTTGGCTCCGTGGAGGCAAAATGAGCTGGAGAGGATGA ACCCAGAGGACTTACTAGCTTTATCCAAATCAGATTACTACTGTTGGTGCTTGGATTCCTAG
AA sequence Show only first row Show all	>Lus10008787 pacid=23177847 polypeptide=Lus10008787 locus=Lus10008787.g ID=Lus10008787.BGIv1.0 annot-version=v1.0 MDYRNDSSENSRNKCAACFRQFNKKEHLVEHMRISFHSVHEPKCGICKKHCRSFESLREHLIGPLPKQECKNIFNVRGCRFCLTILDSSNARRAHQDRCQ FPNVNAGLLARVATLGLRDSLSTESGYSRGTQVVALACKMVGGGSDGSLDLCGRVCLVDENENILFHSYVKPPIPVTNCRYETTGIRPEYLRDAVPLRQV QKKIQDFLSNGEPMWKIRPRGGRARILVGHGLDHDLDRLQVEYPAVMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQMGTQDPYEDCVATMRLYMRM RSQRHGAEDYPVATDPQNRNNLAPWRQNELERMNPEDLLALSKSDYYCWCLDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27970			Exonuclease family protein (.1...		Lus10008787 [exp]	0	1
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	2.0	0.8033
					Lus10042098 [exp]	6.9	0.8058
AT2G48030			DNAse I-like superfamily prote...		Lus10029630 [exp]	11.0	0.7685
AT5G48630			Cyclin family protein (.1.2)		Lus10002354 [exp]	12.6	0.7821
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	17.6	0.7913
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034413 [exp]	17.9	0.7387
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	19.4	0.7716
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024179 [exp]	20.2	0.7080
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	21.0	0.7470
AT1G15860			Domain of unknown function (DU...		Lus10013742 [exp]	22.3	0.7494

Compare expression of checked genes

Lus10008787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.