Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55250 328 / 2e-113 PDE329 PIGMENT DEFECTIVE 329, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022229 [exp] 506 / 0 AT3G55250 331 / 8e-115 PIGMENT DEFECTIVE 329, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G073000 [exp] 367 / 8e-129 AT3G55250 312 / 5e-107 PIGMENT DEFECTIVE 329, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008788 pacid=23177874 polypeptide=Lus10008788 locus=Lus10008788.g ID=Lus10008788.BGIv1.0 annot-version=v1.0 ATGGTGGCTGTGATTACTCCTCCTTCATCGCTATCCTCCTCCATCTCCCCATCTCTGCAAAGCTCTCGACCGAGAATCTTCGCGAACTGCACAGTACCCA GAAGACACCAGAGCTCAAATGGGTTCTTCTCCGTCCGAGCTTACATGGAGAATCCCAACTCCATTTCTGGCTTCGTCAGCAAAGTCATCGGATCCCTCCC TGTAGTGGGCCTCTTAGCCAGAATTGTCAGCGACGAAGGTGGAGTTGGTGGCGATCTCATTGATTTCGCGGAGTTTAGAAGGCGAGTCGGCAAGCAATGC ACAATCATGGATTCCAGAGCTTTCGTTGAGTTCAAGGATAGGCGAGGAAAGGCTGGGGAGCCTCTGTATGTTTTGATGTGCTGTTGGGTGGCGGCTGTTG GGGCAGGACTTTTGAAATCTGAAGAGATTTTTCAAGGGGTAGCCAGACTTCGGGTATCTGATGATATCGAATTTGAAGAGCAGAGTTTCATTGCTTTGCT GAACGAAGCTAAAGAGAGACGATCCAAGATGAAAGTGGCAGCACCCTTCGTTCCAATGGAGGTTCGAACAGAGAAGGCAGTGGATGCAATCTATATTTGT TGCTTTGATAAGGATCCCATAGAAGAGGAAGACAAGAGGCTGCTAGAAGTGATGCTGCCTGCTGTTTTCCCATCGGTTAATCGGCAAGAGATAGATAGGA TTGTAGAGGCCAAAGCCATTAGAGTTGCTCAAGGCATGGATGAGATGAATGTTCCAGATGCGAAGCGACTACGGAAAGATGCTGTTCAGTTACAGATGAA AGACCTGCAGTTCCTCCAGCAAAACAAAGATGATTGA
AA sequence Show only first row Show all	>Lus10008788 pacid=23177874 polypeptide=Lus10008788 locus=Lus10008788.g ID=Lus10008788.BGIv1.0 annot-version=v1.0 MVAVITPPSSLSSSISPSLQSSRPRIFANCTVPRRHQSSNGFFSVRAYMENPNSISGFVSKVIGSLPVVGLLARIVSDEGGVGGDLIDFAEFRRRVGKQC TIMDSRAFVEFKDRRGKAGEPLYVLMCCWVAAVGAGLLKSEEIFQGVARLRVSDDIEFEEQSFIALLNEAKERRSKMKVAAPFVPMEVRTEKAVDAIYIC CFDKDPIEEEDKRLLEVMLPAVFPSVNRQEIDRIVEAKAIRVAQGMDEMNVPDAKRLRKDAVQLQMKDLQFLQQNKDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10008788 [exp]	0	1
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10022229 [exp]	1.0	0.9524
AT1G45230			Protein of unknown function (D...		Lus10009756 [exp]	1.4	0.9516
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10001339 [exp]	2.8	0.9368
AT2G24060			Translation initiation factor ...		Lus10035814 [exp]	5.7	0.9130
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036600 [exp]	6.3	0.9214
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10013642 [exp]	6.9	0.9379
AT1G54500			Rubredoxin-like superfamily pr...		Lus10015945 [exp]	11.4	0.9303
AT4G27390			unknown protein		Lus10038584 [exp]	13.6	0.9259
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	15.4	0.9241
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10029351 [exp]	15.7	0.8667

Compare expression of checked genes

Lus10008788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.