Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29880 1046 / 0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) AT1G29870 561 / 0 tRNA synthetase class II (G, H, P and S) family protein (.1) AT3G44740 241 / 5e-75 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042096 [exp] 1187 / 0 AT1G29880 1174 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10029203 [exp] 1173 / 0 AT1G29880 1067 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10036929 [exp] 193 / 9e-53 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10036930 [exp] 110 / 1e-28 AT1G29880 92 / 4e-23 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G067800 [exp] 1100 / 0 AT1G29880 1203 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Potri.003G162300 [exp] 1087 / 0 AT1G29880 1192 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence Show only first row Show all	>Lus10008792 pacid=23177853 polypeptide=Lus10008792 locus=Lus10008792.g ID=Lus10008792.BGIv1.0 annot-version=v1.0 ATGGATCCAGCAGCGACAGCTGAGGACTTGAAAGCTGCTAAAGCCGACAAGACAGAGATGGAGTCGGCGATCGAATCGCTGAACGCGCTGAAGCTGGAGA AGTCGTCCGTGGAGAAGCAGCTCCCGTCTGGCGACGGAAGCTCTTCCAGGGAGGCGCTCCGTCAGGCAGTCGGGAACACTCTTAAACGGAGACAGTTCTA CCTTCCGTCTTTCAAGATTTACGGAGGCGTTGCTGGTCTGTACGACTATGGACCTCCTGGTTACTCTGTGAAGTTAAATGTCCTCGCGCTCTGGCGCCAG CATTTTGTGTTGGAGGAGAACATGTTGGAAGTGGCCTGCCCATGTGTAACACCAGAGGTAGTGCTCAAAGCATCAGGTCATGTGGATAAATTCACAGATC TCATGGTTAAGGATGAGAAAACAGGGACCTGCTACCGAGCTGATCACTTGCTCAAGGACTTCTGCAATGAGAAGCTTCAGAAAGATCTTACCTTAACTGC AGAGAAGTCAACAGAACTTAAACATATACTTGCTGTGTTGGATGATCTCTCCACTGAGGAGCTCGGTGCCAAGATCAAGGAATATGGCATTACAGCTCCA GATACAAAAAATCCGCTTTCCGATCCATATCCATTCAACTTGATGTTTCAAACTTCCATTGGCCCATCAGGATTGAGCCCGGGCTTCATGCGTCCTGAAA CGGCGCAAGGGATATTTGTGAATTTCAATGAGTTGTACGATTACAATGGGAAAGCACTTCCGTTCGCTGCTGCTCAGATTGGCCAGGCCTTTAGAAATGA GATTTCTCCCCGACAAGGCGTATTGAGAGTTCGAGAATTCACATTAGCAGAGATTGAGCACTTTGTCGACCCCGAAGACAAGACACACCCAAAGTATGCT CAAGTTGCAAATCTAGAGTTCCTGATGTTCCCTAGGGAAGAGCAGATGTCTGGGCAGTCAGCAAAGCTAATTCAACTTGGCGATGCCGTATCAACGGGTA TTGTCAACAACGAAACTCTTGGCTATTTCATCGGCAGAGTTTACCTCTTCCTAACTCTACTCGGTATTGACAAGAAGCGGTTACGATTCCGGCAGCATCT TGCAAATGAAATGGCACATTATGCTGTCGACTGTTGGGATGCAGAGATCGAATGTTCATATGGTTGGATCGAGTGTGTTGGTATTGCAGATAGGTCTGCA TATGATCTGCGTGCCCATTCGGAAAAGAGTGGAGTTGCGCTTGTTGCTGCTGAAAAGTTTGCAGTACCTAGAGAAGTTGAGGAATTGGCAATTACACCAG TGAAGAAGGAGCTTGGCCTTGCATTTCAGGGTAACCAAAAGAACATCGTTGAAGCCTTGGAGGCAATGCCAGAAAAAGTAGCCATGGAAATGAAGGCTGC TCTCGAATCCAAAGGGGAGACAGAGTTCTACGTCTGCACTCTCAGCAAAAACGTCGTCATCAAGGAGAACATGGTCTCGATCTCTAAGGAGAAGAAAAAG GAACACCAAAGGGTCTTCACACCATCAGTCATCGAGCCATCTTTTGGCATTGAGCGCATCATATATTGCCTATTCGAGCACTCTTTCTACACCAGGCCTA GCAAAGCCGGGAACGAACAACTGAACGTGTTCTGTTTCCCTCCTCTTGTCGCCCCGATCAAATGCACGGTGTTCCCCCTCGTCAAGCTTCAACAGTTCGT GGACATCGCCAAAACCATTTCCAGGTCGTTGACTGTTGCTGGAATCTACAACAAGATAGACATCACAGGTACCACGATAGGGAAGCGGTACGCCAGAACA GACGAATTGGGTGTACCCTTTGCCATTACGGTCGACTCAGCTGATTCAGTCACGATTAGGGAGAGGGACAGCAAGGATCAGATTAGAGTGAAGCTGGAAT ATGTGGTGTCAGTTGTGAAGTCGTTAAGTGATGGCCAAACCACATGGGAATTGAACAAGAAGTTGGTGGAAGAGAACAACAAGTTGGTGGAAGAGAACAA CAAGTTGGTTGAAGAGAACCTCCAACAAGTTGGTTGA
AA sequence Show only first row Show all	>Lus10008792 pacid=23177853 polypeptide=Lus10008792 locus=Lus10008792.g ID=Lus10008792.BGIv1.0 annot-version=v1.0 MDPAATAEDLKAAKADKTEMESAIESLNALKLEKSSVEKQLPSGDGSSSREALRQAVGNTLKRRQFYLPSFKIYGGVAGLYDYGPPGYSVKLNVLALWRQ HFVLEENMLEVACPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCYRADHLLKDFCNEKLQKDLTLTAEKSTELKHILAVLDDLSTEELGAKIKEYGITAP DTKNPLSDPYPFNLMFQTSIGPSGLSPGFMRPETAQGIFVNFNELYDYNGKALPFAAAQIGQAFRNEISPRQGVLRVREFTLAEIEHFVDPEDKTHPKYA QVANLEFLMFPREEQMSGQSAKLIQLGDAVSTGIVNNETLGYFIGRVYLFLTLLGIDKKRLRFRQHLANEMAHYAVDCWDAEIECSYGWIECVGIADRSA YDLRAHSEKSGVALVAAEKFAVPREVEELAITPVKKELGLAFQGNQKNIVEALEAMPEKVAMEMKAALESKGETEFYVCTLSKNVVIKENMVSISKEKKK EHQRVFTPSVIEPSFGIERIIYCLFEHSFYTRPSKAGNEQLNVFCFPPLVAPIKCTVFPLVKLQQFVDIAKTISRSLTVAGIYNKIDITGTTIGKRYART DELGVPFAITVDSADSVTIRERDSKDQIRVKLEYVVSVVKSLSDGQTTWELNKKLVEENNKLVEENNKLVEENLQQVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10008792 [exp]	0	1
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10015460 [exp]	2.6	0.8528
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10028517 [exp]	3.7	0.8882
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	5.3	0.8730
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10038140 [exp]	7.7	0.8823
AT4G03220			Protein with RNI-like/FBD-like...		Lus10006970 [exp]	11.0	0.8405
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10006210 [exp]	11.6	0.8536
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10039592 [exp]	15.4	0.8352
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10007016 [exp]	17.5	0.8743
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	20.0	0.8535
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10009126 [exp]	20.8	0.8365

Compare expression of checked genes

Lus10008792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.