Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01470 260 / 8e-87 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT4G40060 139 / 2e-39 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 135 / 1e-37 HD ATHB6 homeobox protein 6 (.1) AT5G15150 130 / 6e-36 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT5G65310 130 / 6e-36 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT1G69780 130 / 6e-36 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT3G01220 127 / 6e-35 HD ATHB20 homeobox protein 20 (.1) AT1G26960 124 / 6e-34 HD ATHB23 homeobox protein 23 (.1) AT1G27045 119 / 3e-32 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT2G46680 106 / 3e-27 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022225 [exp] 520 / 0 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10042180 [exp] 162 / 5e-48 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 159 / 1e-46 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10004270 [exp] 157 / 5e-46 AT3G01470 152 / 5e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 150 / 2e-43 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037218 [exp] 138 / 7e-39 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036709 [exp] 135 / 5e-38 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10023159 [exp] 135 / 2e-37 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10013277 [exp] 130 / 5e-36 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065400 [exp] 177 / 1e-53 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 163 / 2e-48 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.007G097100 [exp] 139 / 6e-39 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 138 / 1e-38 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.008G194400 [exp] 134 / 2e-37 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.017G081700 [exp] 130 / 7e-36 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.010G093400 [exp] 129 / 3e-35 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.008G148200 [exp] 128 / 3e-35 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.002G100600 [exp] 123 / 1e-33 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.005G161500 [exp] 118 / 2e-31 AT4G40060 187 / 4e-58 homeobox protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10008795 pacid=23177873 polypeptide=Lus10008795 locus=Lus10008795.g ID=Lus10008795.BGIv1.0 annot-version=v1.0 ATGGATCATCATCGCCAACAGTCCGGCCACCTTTTCTTCGATCCTGCAGCTTGCCATGGAAATACCCTGTTTCTGGGGGGCGACAATCCTGTTTTTCAAG GTCAAGGAAGCTTGCTGAGCATGGAGGACGCCTCATCAAAGAAGAGACCATTCTTCAGCACGTCGGCTGATTTCTACGATGACGAATACTACGATGAGCA GTTGCCGGAGAAGAAGCGCAGACTTACAGCAGAACAGGTGAATCTGTTGGAGAAGAGTTTTGAGGCAGAGAACAAGCTGGAGCCAGAGAGGAAGACAGAG CTGGCAAAGAAGCTGGGATTGCAGCCTAGGCAGGTGGCTGTGTGGTTCCAGAACAGGAGGGCTCGTTGCAAGACAAAACAGCTGGAGAGGGACTATGATC TTCTCAAAGCTTCTTACGATTCACTTCGTTCCAACTACGACTCTGCTGTCAAGGAGAATGACCGTCTCAAATATGAGGTGGTTAGTTTGACCGAGAAACT AGAAGCCAAAGAGATTACCCTAGCACAGGCTGAGAACCCATGCACGCTTCCGACTGAAGCCACGGCAAACCTATTGGGGCATGAGGTGGTCAACGTCAAG GCAGAGGACAGGGTGAGCACAGGAAGTGCTGGAAGTGCAGTGGTTGATGAGGACAGTCACCAACTTGCGGACAGTGGCGATTCATATTTCTTGGCCAACG ACTACCCTGGTGGCGTACTTCCAGGGGAAGCCATGCTGTCGGAAGAGGATGAGAGGAGTGACGATGGTGGTGGATACTTCACCAACGTATTCATGGATCA GGAGGAGGAAGGAAGGCTCTGGGATGGTGGGTTCGGTCCTAGACTGACTTCTTGGCTGTGA
AA sequence Show only first row Show all	>Lus10008795 pacid=23177873 polypeptide=Lus10008795 locus=Lus10008795.g ID=Lus10008795.BGIv1.0 annot-version=v1.0 MDHHRQQSGHLFFDPAACHGNTLFLGGDNPVFQGQGSLLSMEDASSKKRPFFSTSADFYDDEYYDEQLPEKKRRLTAEQVNLLEKSFEAENKLEPERKTE LAKKLGLQPRQVAVWFQNRRARCKTKQLERDYDLLKASYDSLRSNYDSAVKENDRLKYEVVSLTEKLEAKEITLAQAENPCTLPTEATANLLGHEVVNVK AEDRVSTGSAGSAVVDEDSHQLADSGDSYFLANDYPGGVLPGEAMLSEEDERSDDGGGYFTNVFMDQEEEGRLWDGGFGPRLTSWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10008795 [exp]	0	1
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	1.4	0.8961
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015632 [exp]	2.0	0.8961
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10007877 [exp]	3.0	0.8653
AT2G16050			Cysteine/Histidine-rich C1 dom...		Lus10017477 [exp]	3.5	0.8539
AT4G21970			Protein of unknown function, D...		Lus10040067 [exp]	3.5	0.8438
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	6.9	0.8363
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10037650 [exp]	7.1	0.8519
AT3G01270			Pectate lyase family protein (...		Lus10023623 [exp]	8.1	0.8209
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	8.1	0.8156
AT3G27030			unknown protein		Lus10041550 [exp]	9.8	0.8102

Compare expression of checked genes

Lus10008795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.