Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01460 1500 / 0 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G77250 66 / 3e-10 RING/FYVE/PHD-type zinc finger family protein (.1) AT5G24330 61 / 4e-09 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G44800 60 / 3e-08 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT3G05670 59 / 4e-08 RING/U-box protein (.1) AT5G09790 53 / 2e-06 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT5G22760 50 / 2e-05 PHD finger family protein (.1) AT2G25170 50 / 3e-05 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT5G12400 49 / 6e-05 DNA binding;zinc ion binding;DNA binding (.1) AT4G14700 48 / 0.0001 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022224 [exp] 2242 / 0 AT3G01460 990 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030625 [exp] 637 / 0 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 456 / 5e-133 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10030865 [exp] 71 / 9e-13 AT3G01460 75 / 6e-15 methyl-CPG-binding domain 9 (.1) Lus10042764 [exp] 71 / 8e-12 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10029733 [exp] 69 / 3e-11 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10028655 [exp] 64 / 1e-09 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10000973 [exp] 63 / 2e-09 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008495 [exp] 63 / 5e-09 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072460 [exp] 1123 / 0 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.017G072580 [exp] 839 / 0 AT3G01460 705 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.002G076900 [exp] 66 / 4e-10 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.012G018300 [exp] 61 / 3e-09 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.005G183700 [exp] 62 / 6e-09 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.015G009632 [exp] 60 / 7e-09 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.005G021000 [exp] 61 / 9e-09 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.003G126600 [exp] 61 / 2e-08 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.013G011400 [exp] 59 / 5e-08 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.003G110100 [exp] 54 / 2e-06 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain CL0081 [flax] [poplar] PF00439 [flax] [poplar] Bromodomain Bromodomain CL0081 [flax] [poplar] PF05964 [flax] [poplar] FYRN F/Y-rich N-terminus
Representative CDS sequence Show only first row Show all	>Lus10008796 pacid=23177860 polypeptide=Lus10008796 locus=Lus10008796.g ID=Lus10008796.BGIv1.0 annot-version=v1.0 ATGGGACTCAACGATTCAACCGACGTCGCCGCCGACGCTGTAGCAGCCCTCGCCGCCTCCACTCCTCGCTCTCCGCTTCCGATTGATCTCAATGAGATCC CTTCTTCATCTTCTCCTTCCTCGCTCCCGCACCTCCCCGAACAGGAACAAGCCGAGCCCTCCGACGATTATCTAGCTCCCGTCGACATCGTTCGCTCTTT CCATGACTATCCCGACCCGCCTCCCGGTGTTGCTGCTGGCCTGCCCCGGGATGGAGCCTGCGAGGCTTGTGGCGACTCCGAGTTGCAGGGTCAGGCGGTC GTCTGCGATGGTTGCGAGCGGGGCTTCCACTTGGCGTGCGTTGAAAAGCGCGGGGGCGGGGGATGTGATGCCGCTGGTTCGTCGGAGTGGCTCTGCCCCG AGTGCATCGGCGGTGGTTTGAAGAGTAAACGGTGGCCCTTGGGTTTTAAGAGTAGTAAGAGGATGATTTTGGACATTAATGCCTCGCCTCCCAGTGATGG GGAGGGCGATGAAGAAGACGAGCTTCTTCATTTGAGGAAGGGCACTCTTGGTGATAATTCTTCTGATGGAAATGCATTTGGTGCCCCAGTGACATATTCA AATATTTTGTATGCGGGGAACGGATTTGGTTCGAGGAAAGGTTCAGGAATGGTGATGCATGCACTCAGGATGGGTTTCGGGAACCTATCACATCATGATA CAGATAGAAGCCTAGAAGAAGTAAACTGGGGATTTCCTTTAGGGAAGTGTAGGAGTGGTGATGATACAACAATCAGATTGCCATCTAGGAAACCAGATGA GCTTTTTCTGCAGGGTCTTAGAGAATTCGTTGCTGAACGGCATGGTGTGCTGGAAGAAGGTTGGCGTGTAGAATTGAGACATTCTTCTAGTAGTTATGAA CTCTATGTGGTCTATTGCTCTCCAGATGGGAAGACTTTCGGTTCAATGTCTGAGGTTGCTTGTCATCTCGGATTGTTGTCTGTTAATAATGCAATGGATA TTGATAGTAGTATTAGCCCTTGCTCAAAGCTTCCTGAAAGGCCACATGCATATAAGAGGAGAAAGTCAAAGAAAAATAGGGAAGATGTGCAAAATGGCTA TAATAAGCATTTGTTGTCAAATAATGAAATTGGAGTGATACAAGGCGGAAAGTTGGGGCAAGTCACAGAACTCAAAACAGGTGAAATTGGTGCCGCAAAT GCTGAGCTATCTAGTGATGGATTTCCAGTTCAGTTTGGAGATTTCTTTGTTATGTCGTTGGGAAAAATTGATACAAGACCATCCTATCATGATGTTGGGC ACATCTGGCCAATAGGTTATAGGTCATGTTGGCATGATAAGGTTACTGGATCGATATTTGTATATGAAGTGGAAGATGGCAGTGATTCAGGGCCTGTCTT TAGGATCAAGCGGTTTTCATGCTCTGTGTTCCCCGTTCCTGATTCATCAACTGTTTTGGGCAGGAAAAACATTGACCTGCTTGCCATACAGAACAGTGAA GAGAGTTGTGGTAAGCTGTGCAATGGAGATAAAAAAAATGGCGAGATTCTTGAGATGTTTCTTATGGAGCATTCCCCTCCAACAGAAAATGATGTTTTGA ATTGTCTCAACTGTTTGTCCAGTGAATGTTTTGCTGAGACTTCAAAGTGCTTGCAGAATAGTTCAGCTTGTGGCAGCTCTGTGGTTCTTTCATCAGATAA ATATGCTGGAGAATATGTTGGTGAGATATCAGTGGAAGGGAAGTCATCATTGTCTGCTTGGAGAACATTAGTTCAGAAATTAATCGATGCGTATTCTGAA ATATACAAACGTGAAGGTAAGCTTAGACTGTCCTGTAATCATGCTGATATTGCTGTGGGAGAACCAACATGCGTCCCTCAGGATGGGAACATAGAAACTG GGTTTTCTGCATTGACCAAGTTCTGCAGTTCCCCAATCTATATTGGCATTCCGTTGGAATACCAGGGAGAAGTCGGCTTATTGGCTGCTTCACTTCTAAA GTGGCTTGACCAGGATAGGTCTGGACTGGATGCGGATTTTGTTCAAGAGATGCTAGAAGAGCTTCCTGGAGTTGAAATCTGTTCAAAATACGACTCTTTA ATACATAGAAGCAAGCACACTGCAGTATTAACTATAGGAAATGGACTATTAACAGCTAAAAGGGAACATGGTGGTTTATTAGATGACTTATTTCGCAGCT CTAAGAAGCAAAGGCTGACTAAAGACAGCGTAATGGATTATCCTCGAGGAAGGCTGTTGTGCTCCAAGCTTCCTTCTTCTGTACTTGTTGGTGATCTTTA TCAGATATGGGAGTCAATGTGGCGTTTCCACAAGATTTTGGGCTTGAAAGAGCCTCTTAAACTGGAGGAAGTTGAAGAGGAAATTATCCGCCCATGGTCT GGTGGATTGGCTGGTGGTAATAACTTTAAGAAGGTTCAGGGAAGTCGAGTCCCAGATATTCTAGGCCTTGATACACCGAATGGGCAAATCCAATCTTCAA GTGATGATCATATGATGGTAAATGAAGATGATCCACATGCTTTTATACAAATAGAGACAAAAATTGCACCTGATGGAGCCAACAGTGAACTTACCGCTAC AAACTCCCATAGATGCATTGGTGCTGCGTTAACTGCTGGTCATAGTGCTCTTTTAGGTGTTTTAATAAGCGAGCTGCAATCCAGAGTTGCTGTAATTGTA GATCCGACTTTTGACTCTGGGGACATTAAATCAAAAAGGGGAAGACGCAAAGATTCTGATAGTGCAATTTCTGGGAGAAGAAGTAAAATAACTATGCTTC CTATTAATGAACTGACATGGCCAGAATTATCACGGAGATTTGTCCTGGCAGTCTTGTGCATGGATGGTAACCTTGAATCTGCTGAGATTACAGCTCGTGA AAGTGGTAATAAACTGATCCGCTGCTTGCTAGGAGATGGTGGGGTGCTTTGTGGTGCACTTACTGGGGTTGCAGGAATGGAAGCAGATGCACTGTTGCTT GCAGAAGCTATGAAGAAACTTTACGGAACTTCAAGTTGTGAAATGGATGTTATTACCATTGAAGACGAAGTTACAGATGCAAGTGGGGCCAGTGAAAAGA ATGAACCACATGATTTGACCATGCCTGAGTGGGCACAGGTGCTGGAGCCTGTTCGGAAACTGCCCACTAATGTCGGTACCAGAATCAGAAAGTGTGTGAA CGATGCTATTGAAAAATGCCCACCAGAATGGGCTACGGAAAGACTGAAACATTCAATCAGTAAAGAAATCTACAAGGGAAATGCGTCAGGGCCAACAAAG AAAGCAGTACTAGCAGTGCTCGCCGAAGTACAGAATGAGATATTGCTACAGAATTCTGAAAAGAAAAATAAGAGGGAAGTTACTATACTGATATCTGACA TTGTAATGAAGCAATGTCGGATCGTCTTATGTCGGGTTGCTTCTGCTGATGATGGGAAAGTGTTCTGCACCTTGCTTGGTAGAAATCTACTAAATTCAAG TGATAATGATGATGAGGGGCTCCTTGGATCTCCAGCGATGGTTTCCCGTCCTCTTGATTTCCGAACTATAGATTTGAGATTAGCTCTGGGAGTTTATGGG ACTTGCCATGCCTCTTTTCTTGAAGATGTGCGAGAGTTGTGGGACAACGTGCGGACTGTCTTTCATGACCAGTCTGATCTGTGTGAATTGGCCGAGACAC TTTCCCAAAATTTCGAATCTATGTATGAGAAAGAGGTCCTCGACCTCGTTAAGAAGTTGGAGGGATATGCTAAAATGGACCAGATAATAGGGGAAACTAG AAAGGACTTGGATGACATCCTTGCCTCAATTGAAGAGATTCCAAAAGCTCCCTGGGATGAAGGGGTTTGCAAACTCTGTGGCGTGGATAAAGATGACGAA AGTGTCCTATTATGTGATACTTGTGATGCAGAATATCATACTTATTGCTTGAATCCACCACTTGCAAGGATTCCCGAGGGGAACTGGTATTGCCCATCCT GTGTAAGTGGTGTTTGTGTCGTTCAACAGCCGTCACAGGACAGTCAAGTTTCTGGCAGAAGTCGACGCAAGAAATACCAGGGTGAGGTGACCAATCTCCA CTTAGACAAACTTGGACGCTTATCTGTCATTTTAGGACAAAAAGACTATTGGGAGTTCACTGTCGATGAGAGAGTCTTCTTGCTCAAGTTCTTGTGTGAC GAATTGCTTGGATCAGCTCTTATTCGTCAACATCTCGATCAGTGTATTGAAACTAATGCTGAGCTGCAACAGAAACTGCGAGCATTTGTGATTGAATGGA AAAATATGAAGGCTAAGGAAGAGTTCATGGCTCTTAAAGCTGCAAGATCCAGTTCATTTTTTGAAAAAGTTGTGAAGGATGGGGCTACATCTGTAGTTGT CAATCATGGTAGCCATGTGGCACAGCCAACTAGTTTAAGCAATGAGCCTACACATTGTAGTCAGACATTGACAATAAAGTGTGGCCGAGAAGGCACTGGG GTCAATAGCTGTAGCGACCACCATGTGAAGGACTCTGAAGGCAATCAGTCTGGTAAAGACCAAACTGTGGATCTGTCAAATAAAAGTAGCCGAGTTAAAG GTCTTCTTACTTCAAGTAATGGTAAGAACAGTACTTGTCAAGAGACTAGTAATTCATCTCAACTTAGCCAGTTAAGTCCTGAAGCTCAGTTGGTACAGGA GGGTGATGATATGCCTGAAAGTGAATCCAGAAATTCACAAGGACTCTTGCCTACTGCTAATATGAGTGAGTCGCAACAGTTTGATATTGAGCTCCGTACT GTCAAGAATGACATTCTTAAGTTGAAGAATTCTATACTGAGCATAGAGTTGGAGCTGTTTAGGCTGTCTATCAGAAGGGATTATTTGGGTAGTGATTCTA GTGGTCGTATTTACTGGGCTTCAGCTTTGCCCGGAAAGCATTTTTGCGTGATTGTGGATGGAACTTGTTCACTGGAGCAAAGAGAAACGTCAGTATATGG AAAAAACCCATTGCGTTATACTTCAGATAGGAACAAGTTGGGGACTGCCAAAGATCGCTTTCCTTTTGCAGGTCTGACGGATTCTGCAGGTATACATTCA TACTGGATTATGTATGAAACTGATGCAGAAATTGAGGAACTCATTGGTTGCTTGAAGAACAATGACACTAAAGAAAAAGAATTGAAAGATTCTTTAATGC AACTGCTAAAGCTGAGATCTCTTGAGAATCCGAAATCTTGTAATCCAGTCGAGTCTGAGCACCAAACAGCCCCATCATTGGATGCAGACAACGAGAAAGT TTCATGTAGTGATGTTGTTACAAAAGCTTCTGTATACTTGGAGAAGAAATATGGCAATCCTGTTGCGTTAGAGTACTGTGACCTGTCAAACAAGACGTGC GAAAATTTAAGAATGACTGATGAAGATAAGACGTACAGGTGCCAGTGCTTGGAGCCAATTTGGCGTTCTAGACTCCATTGTGTCTGTTGCCACAGAAGTT TCAGTGATGATGTTGGATTCAAGGCCCATGGTGATGGCAAGTGCAATCAAACTCAGTATTTATATAAGCCGTCTGATGAGAGTAACTATTCTATAAGGGT GGGGAACAATATGACATCTGAGGCTAATAAGAAAGATTGTTCAAGCCAAAAGGAGGTTGTTGAAATCTATCAAAGCAGGTCTGATGTCAGACCTAGGCTG GTTAAATTTCAAAATGAGGTGACAGCAAGCCCCTATAATTTTGAAGATATTAGCACTCGATTTGTTACAGAAGATTCTGTCATGGAGTTGGTGCAGGAAA TAGGTCTGGTTGGTTCGAAGGGGGTCCCATCATTTCTTGCATCTCCTTCTCCGTATGTCAGTGATTCCACTGTGATGTTGATTTCTACACAACATGGAGG TGGTCTTGTCAATGAGTTGAATTTTGATGCGAGCCCGGCTGATCAACCAGTGTGTGATGAAGTTTCAGGAAAATCAGCTGCTGTCGAAACAAATGAGCTT GCAAGGACTAAAAAGTCTTCTTTGGGATGCCTGGAAAGACGTGATATCAAGCCCCACTATGATAAACGGAGTCTTGAAATAAGACTTGGTAACTTATGTG TAGTTCCTTCTTCTGCAATACGACCACTGATAGGCAAGGTTGCTCCTATTCTAAGAAAATTAAAGATCAATTTGCTTGATATGGAGGCGGTTCTGCCTGA AGATGCCCTAAGGGCTTCAAAATCCGGGATGGAAAGAAGGTGGGCATGGCGTTCCTTTGTGAAATCAGCTAAGACAATATACGAGATGATCCAAGCGACA ATTGTATTGGAGGACATGATTAAAAGAGATTGCCTGAGGAACGAGTGGTGGTATTGGTCATCTCTTTCAGCTGCCGCCAAAACTTCTACAGTCTCTTCCT TGGCACTCCGGATATTCTCCCTTGACTCTGCCATTGTTTACGAGAAATTTTGTTGTGATTCGAATCCCTCAGATAAGCTGGAACCCAGCTGTATACCAGA AGAGAAAACAGTGCATCTGGATTCAGCTGAAAAAATAAAGGTGGGGAGGAGATCTAATAAGAAAAGGAAGGAACCAGAAGGTTGA
AA sequence Show only first row Show all	>Lus10008796 pacid=23177860 polypeptide=Lus10008796 locus=Lus10008796.g ID=Lus10008796.BGIv1.0 annot-version=v1.0 MGLNDSTDVAADAVAALAASTPRSPLPIDLNEIPSSSSPSSLPHLPEQEQAEPSDDYLAPVDIVRSFHDYPDPPPGVAAGLPRDGACEACGDSELQGQAV VCDGCERGFHLACVEKRGGGGCDAAGSSEWLCPECIGGGLKSKRWPLGFKSSKRMILDINASPPSDGEGDEEDELLHLRKGTLGDNSSDGNAFGAPVTYS NILYAGNGFGSRKGSGMVMHALRMGFGNLSHHDTDRSLEEVNWGFPLGKCRSGDDTTIRLPSRKPDELFLQGLREFVAERHGVLEEGWRVELRHSSSSYE LYVVYCSPDGKTFGSMSEVACHLGLLSVNNAMDIDSSISPCSKLPERPHAYKRRKSKKNREDVQNGYNKHLLSNNEIGVIQGGKLGQVTELKTGEIGAAN AELSSDGFPVQFGDFFVMSLGKIDTRPSYHDVGHIWPIGYRSCWHDKVTGSIFVYEVEDGSDSGPVFRIKRFSCSVFPVPDSSTVLGRKNIDLLAIQNSE ESCGKLCNGDKKNGEILEMFLMEHSPPTENDVLNCLNCLSSECFAETSKCLQNSSACGSSVVLSSDKYAGEYVGEISVEGKSSLSAWRTLVQKLIDAYSE IYKREGKLRLSCNHADIAVGEPTCVPQDGNIETGFSALTKFCSSPIYIGIPLEYQGEVGLLAASLLKWLDQDRSGLDADFVQEMLEELPGVEICSKYDSL IHRSKHTAVLTIGNGLLTAKREHGGLLDDLFRSSKKQRLTKDSVMDYPRGRLLCSKLPSSVLVGDLYQIWESMWRFHKILGLKEPLKLEEVEEEIIRPWS GGLAGGNNFKKVQGSRVPDILGLDTPNGQIQSSSDDHMMVNEDDPHAFIQIETKIAPDGANSELTATNSHRCIGAALTAGHSALLGVLISELQSRVAVIV DPTFDSGDIKSKRGRRKDSDSAISGRRSKITMLPINELTWPELSRRFVLAVLCMDGNLESAEITARESGNKLIRCLLGDGGVLCGALTGVAGMEADALLL AEAMKKLYGTSSCEMDVITIEDEVTDASGASEKNEPHDLTMPEWAQVLEPVRKLPTNVGTRIRKCVNDAIEKCPPEWATERLKHSISKEIYKGNASGPTK KAVLAVLAEVQNEILLQNSEKKNKREVTILISDIVMKQCRIVLCRVASADDGKVFCTLLGRNLLNSSDNDDEGLLGSPAMVSRPLDFRTIDLRLALGVYG TCHASFLEDVRELWDNVRTVFHDQSDLCELAETLSQNFESMYEKEVLDLVKKLEGYAKMDQIIGETRKDLDDILASIEEIPKAPWDEGVCKLCGVDKDDE SVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVSGVCVVQQPSQDSQVSGRSRRKKYQGEVTNLHLDKLGRLSVILGQKDYWEFTVDERVFLLKFLCD ELLGSALIRQHLDQCIETNAELQQKLRAFVIEWKNMKAKEEFMALKAARSSSFFEKVVKDGATSVVVNHGSHVAQPTSLSNEPTHCSQTLTIKCGREGTG VNSCSDHHVKDSEGNQSGKDQTVDLSNKSSRVKGLLTSSNGKNSTCQETSNSSQLSQLSPEAQLVQEGDDMPESESRNSQGLLPTANMSESQQFDIELRT VKNDILKLKNSILSIELELFRLSIRRDYLGSDSSGRIYWASALPGKHFCVIVDGTCSLEQRETSVYGKNPLRYTSDRNKLGTAKDRFPFAGLTDSAGIHS YWIMYETDAEIEELIGCLKNNDTKEKELKDSLMQLLKLRSLENPKSCNPVESEHQTAPSLDADNEKVSCSDVVTKASVYLEKKYGNPVALEYCDLSNKTC ENLRMTDEDKTYRCQCLEPIWRSRLHCVCCHRSFSDDVGFKAHGDGKCNQTQYLYKPSDESNYSIRVGNNMTSEANKKDCSSQKEVVEIYQSRSDVRPRL VKFQNEVTASPYNFEDISTRFVTEDSVMELVQEIGLVGSKGVPSFLASPSPYVSDSTVMLISTQHGGGLVNELNFDASPADQPVCDEVSGKSAAVETNEL ARTKKSSLGCLERRDIKPHYDKRSLEIRLGNLCVVPSSAIRPLIGKVAPILRKLKINLLDMEAVLPEDALRASKSGMERRWAWRSFVKSAKTIYEMIQAT IVLEDMIKRDCLRNEWWYWSSLSAAAKTSTVSSLALRIFSLDSAIVYEKFCCDSNPSDKLEPSCIPEEKTVHLDSAEKIKVGRRSNKKRKEPEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10008796 [exp]	0	1
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	2.0	0.9738
AT4G30100			P-loop containing nucleoside t...		Lus10020914 [exp]	2.0	0.9708
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	3.7	0.9735
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	5.0	0.9698
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	5.5	0.9715
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10033928 [exp]	5.7	0.9630
					Lus10014954 [exp]	6.9	0.9391
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10028004 [exp]	8.4	0.9623
AT5G15680			ARM repeat superfamily protein...		Lus10035142 [exp]	9.2	0.9649
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	9.2	0.9605

Compare expression of checked genes

Lus10008796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.