Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30370 72 / 1e-15 RING/U-box superfamily protein (.1) AT2G18670 72 / 2e-15 RING/U-box superfamily protein (.1) AT2G18650 72 / 1e-14 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT5G40250 71 / 4e-14 RING/U-box superfamily protein (.1) AT1G23980 71 / 5e-14 RING/U-box superfamily protein (.1) AT4G09100 66 / 1e-13 RING/U-box superfamily protein (.1) AT5G57750 66 / 4e-13 RING/U-box superfamily protein (.1) AT3G18930 68 / 5e-13 RING/U-box superfamily protein (.1.2) AT3G48030 67 / 8e-13 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT4G30400 67 / 8e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022223 [exp] 334 / 5e-117 AT1G23980 81 / 2e-17 RING/U-box superfamily protein (.1) Lus10015506 [exp] 70 / 6e-15 AT2G18670 102 / 2e-28 RING/U-box superfamily protein (.1) Lus10019979 [exp] 71 / 7e-15 AT2G18670 113 / 5e-32 RING/U-box superfamily protein (.1) Lus10032161 [exp] 71 / 4e-14 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10014526 [exp] 71 / 4e-14 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10029178 [exp] 70 / 1e-13 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10006493 [exp] 69 / 1e-13 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10012987 [exp] 69 / 2e-13 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10037490 [exp] 69 / 3e-13 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073600 [exp] 74 / 4e-15 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 72 / 2e-14 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 71 / 3e-14 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 71 / 5e-14 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 70 / 1e-13 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 69 / 2e-13 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 69 / 2e-13 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.018G098500 [exp] 69 / 2e-13 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.018G098100 [exp] 66 / 2e-13 AT2G18670 91 / 2e-23 RING/U-box superfamily protein (.1) Potri.006G175700 [exp] 67 / 3e-13 AT2G18670 91 / 1e-22 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10008797 pacid=23177865 polypeptide=Lus10008797 locus=Lus10008797.g ID=Lus10008797.BGIv1.0 annot-version=v1.0 ATGGTGGCTTCAGATGTTGTAATCATGGGTATACTAGTCTCAATGCTCTTACTATTCATGGTTGTTGTAGGGGTAGTGATCATCCACGTTTGCGTCACTG CTCGATCGGCCGGGAGAGGAATGGAAGACGACGATACCAATCTTCGAACCGAAAGGAGCAGTAACAGGAGGATGATGAGGAGGTTGTCTCAAGCAGACCT GGACATGCTCCCTTGCTATGAATATCAATCATCCAAGGACAACGATAGCGACAACAACAACATCATCGTCAGGGAAGGGATATTAATTAATGGTGAATTC GGGGAGGCAGATTGCGCGGTGTGCCTAGAAAGCTTCAAGACAGGGGAGAAATGCAGGGTGCTGCCGGCTTGTAAGCACTCTTTTCATGCTGAGTGTGTGG ATGGGTGGCTCCTCAAGATACCCGTTTGTCCAATCTGCAGAGGCAAAATAATTAATTCGGATTTTTCGTTGTCGACGACGATGAGTGCTAATTTCAGTGA TGAGTCAAGGAGCTTGGAGATGAGAGAAAGGAGCTTTGCCAGCATAAGTCAGGGGAGCAGCCTTTTTAGTGATGCGAGTTTTAATCATGTGGTGGGTGGG AGGATGTTCATAAGGGGAAGTGAAAATGTGATAATAGAGATGGTGGATAGCCCAGATAGAGATGTTGATGATGCCATGAGTGATTCCATTTCTGGACCTC CTGCTTCTCTTGATTCATTGCCATTGTAG
AA sequence Show only first row Show all	>Lus10008797 pacid=23177865 polypeptide=Lus10008797 locus=Lus10008797.g ID=Lus10008797.BGIv1.0 annot-version=v1.0 MVASDVVIMGILVSMLLLFMVVVGVVIIHVCVTARSAGRGMEDDDTNLRTERSSNRRMMRRLSQADLDMLPCYEYQSSKDNDSDNNNIIVREGILINGEF GEADCAVCLESFKTGEKCRVLPACKHSFHAECVDGWLLKIPVCPICRGKIINSDFSLSTTMSANFSDESRSLEMRERSFASISQGSSLFSDASFNHVVGG RMFIRGSENVIIEMVDSPDRDVDDAMSDSISGPPASLDSLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40250			RING/U-box superfamily protein...		Lus10008797 [exp]	0	1
AT2G25010			Aminotransferase-like, plant m...		Lus10003764 [exp]	1.0	1.0000
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Lus10010240 [exp]	2.0	0.8303
AT1G65440		GTB1	global transcription factor gr...		Lus10034231 [exp]	4.0	0.7679
					Lus10034034 [exp]	9.3	0.6546
AT5G02700			F-box/RNI-like superfamily pro...		Lus10037151 [exp]	10.3	0.6248
					Lus10012676 [exp]	10.5	0.8260
AT4G20820			FAD-binding Berberine family p...		Lus10023376 [exp]	15.8	0.7666
					Lus10022805 [exp]	18.5	0.7346
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	20.0	0.7346
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	21.4	0.7346

Compare expression of checked genes

Lus10008797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.