Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43670 874 / 0 Sec23/Sec24 protein transport family protein (.1) AT3G23660 563 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT4G14160 557 / 0 Sec23/Sec24 protein transport family protein (.1.2.3) AT1G05520 548 / 0 Sec23/Sec24 protein transport family protein (.1) AT2G21630 514 / 3e-174 Sec23/Sec24 protein transport family protein (.1) AT4G01810 91 / 9e-19 Sec23/Sec24 protein transport family protein (.1) AT2G27460 44 / 0.0003 sec23/sec24 transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022219 [exp] 1222 / 0 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008801 [exp] 1085 / 0 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021963 [exp] 545 / 0 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 543 / 0 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 525 / 4e-178 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 524 / 7e-178 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 117 / 1e-28 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 100 / 9e-22 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 100 / 1e-21 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161300 [exp] 1004 / 0 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 1002 / 0 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 548 / 0 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.001G307400 [exp] 547 / 0 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G178500 [exp] 538 / 0 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 415 / 4e-138 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 97 / 1e-20 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 96 / 2e-20 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10008800 pacid=23177838 polypeptide=Lus10008800 locus=Lus10008800.g ID=Lus10008800.BGIv1.0 annot-version=v1.0 ATGGCATCGATCGGGTCTCCCAGGATTGGGATGGGCGGCGGCGGAGGTGGAGGCGGTGGTGATTTTAGGAAGGTAGGGCCTGCTTTCGTGTTTGTGGTGG ATGCTTGCACCGAGGATGAGGAACTGAGTGCGATTAAGAGTGAGCTTCTCTTGGTTGTGGAGCAGCTGCCAGAGAATGCACTGGTCGGTTTGGTTGCGTT TGATTCAATGGTGAGGGTTACTGATCTAGGTTTCTCTGATTGCTCCAGAGCTGTTGTGTTTCATGGTGAACGTGAGCTCTCATCTCAGAAGACTCAACAA TTTCTGGGTTTGCACATCAGAAAGCAGCAGCAACAACATGGTGGCACACAATTCATCCAGAAACAGGGATTTTTGCTTCCTGTTTCTGAATGTGAGTTCA ACATAACAACTGCAATTGAAGAGCTTTGTTCCTTATCTGTTTTGAAGACCAGCCATCGGCCTCAAAGGTGCACTGGAGCAGCAATAGCTGTTGCTGTTGG ACTACTTGAAGGTTGTTGTGTGAATACCGGATCCAGGATCATTGTGTTCACGTCTGGACCTGCAACTTTAGGCCCCGGTGTTGTGGTGGACTCTGATCTC AGTAGTATGATTAGGACTCATCAGGATCTCATCAATGGCCGTGCACCATACTATACAAACTCTTGCAGCTTCTACAACAACTTGTCTACCCGACTATCAG ATGCATCTATTGTTCTTGATTTATTTGCTTGTTCTCTTGATCAAGTTGGAGTAGCTGAGCTCAAAGTTCCCGTTGAGCAGTCAGGTGGATTCTTGCTCTT GGGCGAGCTATTTGATTCGCATCAGTTCCGAAAATGCCTGCGCCACATATTCAGTCGTGATGACGACAGGAACTTGAAGATGCATTTTGATGCAACAATC GAAGTGGTGACCACTAAAGATGTGAAAATCTGTGGAGCACTTGGGCCTTGTATATCCCTTGGGAAAAAGAATGATTTAGTAAGTGAGCATGAAATAGGCC AGGGCGGAACATACTTGTGGAACTTGGGTACTCTAACAAATAGAACTTGCATAGCTTTCTTCTTTGAAGTGGGGAATGAGCAGAAGGCCCATCCCGGGTC TGCTTTTTTGATACAGTTTATAACACGGTTTCGTCGTGGGAACTTGGGAGTCTATAAAAGGGTTACAACCGCTGCGAGAAGGTGGGTTACGGTAAGCAAA GCAGCAGACATCAGTGCTGGTTTTGATCAGGAAGCAGCAGCTGCTGTAATGGGCAGACTTGCCATCCACAGAGCAGAGAGATGTCACGCGAGAGATGTTA TCAGATGGCTCGATGATAACCTAATTACTTTTGCTTCAAAGTTTGGAGACTATATCGAGGAAGATCCATCGTCCTTCCGGCTTTCGTCAAGCTTCTCTCT TTATCCTCAGTTCATGTACTATCTGAGGAGGTCCCAGTTTATCGATGTTTTCAACTCAAGCCCTGATGAGACCGCGTTCTTCCGCCTGATGCTGAACCGT GAAGGAGTAGTGAGCTCCCTCGTGATGATACAGCCGACATTGTTTCAGTATTCGTTCGGTGGTCCTCCGATTCCAGTCCTCTTGGATGTTCGTTCCGTCT CTCCGGATGTCATTCTGCTCTTTGATTCCTACTTCCAGGTAGTGATCCACTACGGTTCCAGCATTGCTCAGTGGAAGAAGCTTGGGTACCACAACGACCC CAACCATGAGAATCTGAGGAAGTTATTGGAAGCACCTAAGATTGATGCAGAGCAGTTGGTACAAGACAGAATCCCAGTACCGAAACTGATAAAATGTGAT CAGCACAGCAGTCAGGCCAGGTTTCTTCTGGCTAAGCTGAACCCATCAGTGACTCAGGATTCGACGTATAAAGAAGGATCGGAAGTCATATTCACCGATG ATTTCAGCCTGCAAGTATTCATAGATCACTTGCAGACCCTGGCAGTGAAAGGTTAA
AA sequence Show only first row Show all	>Lus10008800 pacid=23177838 polypeptide=Lus10008800 locus=Lus10008800.g ID=Lus10008800.BGIv1.0 annot-version=v1.0 MASIGSPRIGMGGGGGGGGGDFRKVGPAFVFVVDACTEDEELSAIKSELLLVVEQLPENALVGLVAFDSMVRVTDLGFSDCSRAVVFHGERELSSQKTQQ FLGLHIRKQQQQHGGTQFIQKQGFLLPVSECEFNITTAIEELCSLSVLKTSHRPQRCTGAAIAVAVGLLEGCCVNTGSRIIVFTSGPATLGPGVVVDSDL SSMIRTHQDLINGRAPYYTNSCSFYNNLSTRLSDASIVLDLFACSLDQVGVAELKVPVEQSGGFLLLGELFDSHQFRKCLRHIFSRDDDRNLKMHFDATI EVVTTKDVKICGALGPCISLGKKNDLVSEHEIGQGGTYLWNLGTLTNRTCIAFFFEVGNEQKAHPGSAFLIQFITRFRRGNLGVYKRVTTAARRWVTVSK AADISAGFDQEAAAAVMGRLAIHRAERCHARDVIRWLDDNLITFASKFGDYIEEDPSSFRLSSSFSLYPQFMYYLRRSQFIDVFNSSPDETAFFRLMLNR EGVVSSLVMIQPTLFQYSFGGPPIPVLLDVRSVSPDVILLFDSYFQVVIHYGSSIAQWKKLGYHNDPNHENLRKLLEAPKIDAEQLVQDRIPVPKLIKCD QHSSQARFLLAKLNPSVTQDSTYKEGSEVIFTDDFSLQVFIDHLQTLAVKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43670			Sec23/Sec24 protein transport ...		Lus10008800 [exp]	0	1
AT5G43670			Sec23/Sec24 protein transport ...		Lus10008801 [exp]	1.0	0.9639
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	8.1	0.8875
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	11.1	0.8842
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	13.6	0.8879
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10027389 [exp]	17.1	0.8068
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	17.2	0.8671
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031862 [exp]	19.7	0.8126
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	20.2	0.8661
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10024669 [exp]	24.0	0.8563
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10037888 [exp]	25.0	0.8590

Compare expression of checked genes

Lus10008800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.