Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43670 770 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G14160 513 / 4e-173 Sec23/Sec24 protein transport family protein (.1.2.3) AT3G23660 511 / 1e-172 Sec23/Sec24 protein transport family protein (.1.2) AT1G05520 494 / 6e-166 Sec23/Sec24 protein transport family protein (.1) AT2G21630 460 / 1e-152 Sec23/Sec24 protein transport family protein (.1) AT3G57680 78 / 6e-15 Peptidase S41 family protein (.1) AT4G01810 77 / 3e-14 Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008800 [exp] 1084 / 0 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10022219 [exp] 1063 / 0 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 496 / 3e-166 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021963 [exp] 495 / 9e-166 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 487 / 3e-163 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 486 / 1e-162 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 85 / 1e-16 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 84 / 2e-16 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 67 / 1e-11 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161300 [exp] 891 / 0 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 890 / 0 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 494 / 1e-165 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.014G178500 [exp] 489 / 6e-164 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.001G307400 [exp] 486 / 1e-162 AT1G05520 1235 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 379 / 3e-124 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 83 / 4e-16 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 81 / 2e-15 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.006G055400 [exp] 79 / 3e-15 AT3G57680 668 / 0.0 Peptidase S41 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00626 [flax] [poplar] Gelsolin Gelsolin repeat CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF08033 [flax] [poplar] Sec23_BS Sec23/Sec24 beta-sandwich domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10008801 pacid=23177841 polypeptide=Lus10008801 locus=Lus10008801.g ID=Lus10008801.BGIv1.0 annot-version=v1.0 ATGGGCTATGAGCTTCCTCAGTCACGCATCTGTCAGTCGGTCTGCAAGGAAACGAGAACGGTGACGGTGTCGTCCTGTGGCGGCGGTGGAGGTAGGGATC GTGATGAATTTCCGGTGAGAAAGTCGATCGGGAAAGTCTTCGTCGCATTCGCTGCCGCTGCCGCAACTTTGGCTTTCGTTTGCTGTTCCGAACCTCCTCC GGCTTTCGCCGAGTCTCTCACAGTTTCCTTCCCGGTTTCCCGTGCTCGTGATACAATTCAAAGGACGCTTAATGAGGCATGGGGTTTGATCAGGGAGACG TTCGTAGATCCAATCTTCAATCATCAAGCACAGACTCAACAATTTCTGGGTTTGCACATCAGAAAGCAGCAGCAACAACATGGTGGCACACAATTTATCC AAAAACAGGGATTTTTGCTTCCTGTTTCTGAATGTGATTTCAACATAACAACTGCAATTGAAGAGCTTTGTTCCTTATCTGTTTTGAAGACCAGCCATCG GCCTCAAAGGTGCACTGGAGCAGCAATAGCTGTTGCTGTTGGACTACTTGAAGGTTGTTGTGTGAATACCGGATCCAGGATCATTGTGTTCACGTCTGGA CCTGCAACTTTAGGCCCCGGTGTTGTGGTGGACTCTGATCTCAGTAGTATGATTAGGACTCACCAGGATCTCATCAATGGCCGTGCACCATACTATACAA ACTCTTGCAGCTTCTACAACAACTTGTCTACGCGACTATCGGATGCTTCTATTGTTCTTGATTTATTTGCTTGTTCTCTTGATCAAGTTGGAGTAGCTGA GCTCAAAGTTCCCGTTGAGCAGTCAGGTGGATTCTTGCTCTTGGGCGAGCTATTTGATTCGCATCAGTTCCGAAAATGCCTGCGCCACATATTCAGTCGT GATGATGACCGCAACTTGAAGATGCATTTTGATGCAACAATCGAAGTGGTGACCACTAAAGATGTGAAAATCTGTGGAGCACTTGGGCCTTGTATATCCC TTGGGAAAAAGAATGATTTAGTAAGTGAGCATGAAATAGGCCAGGGCGGAACATACTTGTGGAACTTGGGTACTCTAACAAATAGAACTTGCATAGCTTT CTTCTTTGAAGTGGGGAATGAGCAGAAGGCCCATCCCGGGTCTGCTTTTTTGATACAGTTTATAACCCGGTTTCGTCGTGGGAACTTGGGAGTCTATAAA AGGGTTACAACCGCTGCGAGAAGGTGGGTTACGGTAAGCAAAGCAGCAGACATCAGTGCTGGTTTTGATCAGGAAGCAGCAGCTGCTGTAATGGGCAGAC TTGCCATCCACAGAGCAGAGAGATGTCACGCGAGAGATGTTATCAGATGGCTCGATGATAACCTAATTACTTTTGCTTCAAAGTTTGGAGACTATATCGA GGAAGATCCATCGTCCTTCCGGCTTTCGTCAAGCTTCTCTCTTTATCCTCAGTTCATGTACTATCTGAGGAGGTCCCAGTTTATCGATGTTTTCAACTCA AGCCCTGATGAGACCGCGTTCTTCCGCCTGATGCTGAACCGTGAAGGAGTAGTGAGCTCCCTCGTGATGATACAGCCGACATTGTTTCAGTATTCGTTCG GTGGTCCTCCGATTCCAGTCCTCTTGGATGTTCGTTCCGTCTCTCCGGATGTCATTCTGCTCTTTGATTCCTACTTCCAGGTAGTGATCCACTACGGTTC CAGCATTGCTCAGTGGAAGAAGCTTGGGTACCACAACGACCCCAACCATGAGAATCTGAGGAAGTTATTGGAAGCACCTAAGATTGATGCAGAGCAGTTG GTACAAGAGAGAATCCCCGTACCTAAACTGATAAAATGTGATCAGCACAGCAGTCAGGCCAGGTTTCTTCTGGCTAAGCTGAACCCATCAGTGACTCAGG ATTCGACGTATAAAGAAGGATCGGAAGTCATATTCACCGATGATTTCAGCCTGCAAGTATTCATAGATCACCTGCAGACCCTGGCAGTGAAAGGTTAA
AA sequence Show only first row Show all	>Lus10008801 pacid=23177841 polypeptide=Lus10008801 locus=Lus10008801.g ID=Lus10008801.BGIv1.0 annot-version=v1.0 MGYELPQSRICQSVCKETRTVTVSSCGGGGGRDRDEFPVRKSIGKVFVAFAAAAATLAFVCCSEPPPAFAESLTVSFPVSRARDTIQRTLNEAWGLIRET FVDPIFNHQAQTQQFLGLHIRKQQQQHGGTQFIQKQGFLLPVSECDFNITTAIEELCSLSVLKTSHRPQRCTGAAIAVAVGLLEGCCVNTGSRIIVFTSG PATLGPGVVVDSDLSSMIRTHQDLINGRAPYYTNSCSFYNNLSTRLSDASIVLDLFACSLDQVGVAELKVPVEQSGGFLLLGELFDSHQFRKCLRHIFSR DDDRNLKMHFDATIEVVTTKDVKICGALGPCISLGKKNDLVSEHEIGQGGTYLWNLGTLTNRTCIAFFFEVGNEQKAHPGSAFLIQFITRFRRGNLGVYK RVTTAARRWVTVSKAADISAGFDQEAAAAVMGRLAIHRAERCHARDVIRWLDDNLITFASKFGDYIEEDPSSFRLSSSFSLYPQFMYYLRRSQFIDVFNS SPDETAFFRLMLNREGVVSSLVMIQPTLFQYSFGGPPIPVLLDVRSVSPDVILLFDSYFQVVIHYGSSIAQWKKLGYHNDPNHENLRKLLEAPKIDAEQL VQERIPVPKLIKCDQHSSQARFLLAKLNPSVTQDSTYKEGSEVIFTDDFSLQVFIDHLQTLAVKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43670			Sec23/Sec24 protein transport ...		Lus10008801 [exp]	0	1
AT5G43670			Sec23/Sec24 protein transport ...		Lus10008800 [exp]	1.0	0.9639
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	10.5	0.8659
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10024669 [exp]	12.4	0.8541
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	19.0	0.8487
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10020273 [exp]	21.4	0.8491
AT1G24330			ARM repeat superfamily protein...		Lus10015801 [exp]	25.5	0.8310
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10025650 [exp]	27.0	0.8120
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10008646 [exp]	31.5	0.8219
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031862 [exp]	35.0	0.7920
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10023399 [exp]	35.1	0.8431

Compare expression of checked genes

Lus10008801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.