Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64560 549 / 0 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT5G09690 501 / 5e-178 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT1G80900 299 / 8e-98 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT1G16010 298 / 1e-97 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT5G09710 289 / 1e-95 Magnesium transporter CorA-like family protein (.1) AT3G58970 290 / 2e-94 MRS2-4, MGT6 magnesium transporter 6 (.1) AT5G09720 284 / 4e-94 Magnesium transporter CorA-like family protein (.1) AT2G03620 238 / 1e-74 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT4G28580 211 / 4e-64 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT3G19640 175 / 6e-50 MRS2-3, MGT4 magnesium transporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021887 [exp] 622 / 0 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10022218 [exp] 620 / 0 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10024860 [exp] 442 / 8e-155 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10014353 [exp] 298 / 2e-97 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10026063 [exp] 297 / 4e-97 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10015459 [exp] 278 / 1e-89 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10037081 [exp] 225 / 2e-70 AT2G03620 479 / 6e-170 magnesium transporter 3 (.1.2) Lus10001373 [exp] 224 / 3e-70 AT3G58970 450 / 2e-158 magnesium transporter 6 (.1) Lus10041169 [exp] 202 / 3e-63 AT5G64560 205 / 8e-66 magnesium transporter 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161400 [exp] 573 / 0 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.010G077900 [exp] 561 / 0 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.001G043200 [exp] 299 / 8e-98 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 295 / 2e-96 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.006G081700 [exp] 282 / 4e-91 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.008G096200 [exp] 244 / 6e-77 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.007G098200 [exp] 243 / 3e-76 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.010G158100 [exp] 237 / 3e-74 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.007G098000 [exp] 231 / 9e-72 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.009G086300 [exp] 176 / 2e-50 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10008803 pacid=23177864 polypeptide=Lus10008803 locus=Lus10008803.g ID=Lus10008803.BGIv1.0 annot-version=v1.0 ATGGCGAAGGACAGCCATGTTGTTCCGGCCGACCCGGCTGCAGTGACACCGACGCCTCCTGCGGTGGTGGTTGCCGCCGTGAAGAAGAAGACTCAGCCGG CTATGAGTTGGATTCTGGTCGACTCCACCGGCCAAGGCACCATCCTCGATGCTGACAAGCATGCAATCATGCACCGTGTTCAGATTCACGCGCGCGATCT CCGCATCCTCGATCCCTTGCTCTCTTACCCTTCAACAATTCTCGGCCGAGAGAGGGCCATTGTTTTAAACTTGGAGTACATCAAGGCGATTATCACTGCT GAGGAGGTACTGCTGAGAGATCCATCGGATGAACATGTTAGTCCTGTTGTCAAAGAACTTCAAAGGCGATTGCCACTTGCAAATTACACTCACCAAGAAG GTCAATCAAATGATAAAAGCCTTGGCACTCAGCAAATTGATGTTGAAGGGGGTGAAGAAGATGAATCTCCTTTTGAATTCCGGGCTCTGGAGGTTGCTTT GGAAGCCATTTGTATTTTTCTAGCTGAACGCACGACAGAATTAGAGACTGCTGCTTACCCTGCACTGGATGAGCTAACCTCCAAGATCAGCAGCCGCAAT TTGGATAGAGTTCGTAAACTGAAGAGTGCAATGACAAGGTTGACTGCTCGGGTTCAAAAAGTCCGTGATGAGCTGGAACAGTTACTGGATGACGATGATG ATATGGCTGACCTTTACTTGTCGAGGAAGATGGCCAGCTCATCTTCACCAGTGAGTGCCTCAGGTGTCGATTGGTTTTCTGCTTCCCCTACGATAGGTTC TAAAATCTCCAGGGCAAGTAGGGCAAGTGTCGCTACAGTTCGTGATGACGATAATGACGTTGAGGAGCTTGAGATGTTACTAGAGGCTTACTTTATGCAA ATCGATGGCACATTGAATAAATTAACCACGTTGCGAGAATACATTGATGATACTGAGGATTACATCAACATTCAGCTTGACAACCATCGAAATCAGCTTA TCCAGTTGGAGTTGTTTCTCAGTTCAGGCACCGTGTGTTTGTCAATTTATTCTTTGGTGGCTGGAATATTTGGTATGAATATCCCCTACACATGGAACGT TCACTATGGATTTGTCTTCAAATGGGTGGTGATCTTAGCAGGGATATTCTGCGCAGTCGTATTCTTAGGAATCATGTCGTATGCTCGCTACAAGGGGCTG GTCGGATCTTGA
AA sequence Show only first row Show all	>Lus10008803 pacid=23177864 polypeptide=Lus10008803 locus=Lus10008803.g ID=Lus10008803.BGIv1.0 annot-version=v1.0 MAKDSHVVPADPAAVTPTPPAVVVAAVKKKTQPAMSWILVDSTGQGTILDADKHAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEYIKAIITA EEVLLRDPSDEHVSPVVKELQRRLPLANYTHQEGQSNDKSLGTQQIDVEGGEEDESPFEFRALEVALEAICIFLAERTTELETAAYPALDELTSKISSRN LDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMASSSSPVSASGVDWFSASPTIGSKISRASRASVATVRDDDNDVEELEMLLEAYFMQ IDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVAGIFGMNIPYTWNVHYGFVFKWVVILAGIFCAVVFLGIMSYARYKGL VGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10008803 [exp]	0	1
AT5G62760			P-loop containing nucleoside t...		Lus10042176 [exp]	3.5	0.8631
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10022265 [exp]	9.5	0.8236
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	11.0	0.8636
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	20.2	0.8346
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	20.9	0.8241
AT2G37840			Protein kinase superfamily pro...		Lus10021493 [exp]	21.0	0.8297
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10034017 [exp]	26.4	0.8462
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	27.7	0.8096
AT1G69340			appr-1-p processing enzyme fam...		Lus10037119 [exp]	34.0	0.8352
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	37.4	0.8511

Compare expression of checked genes

Lus10008803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.