Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43650 88 / 2e-21 bHLH BHLH92, bHLH092 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G56960 46 / 5e-06 bHLH bHLH041 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G63650 40 / 0.0005 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022218 [exp] 214 / 6e-67 AT5G09690 513 / 1e-179 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10005999 [exp] 42 / 0.0002 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10017152 [exp] 41 / 0.0003 AT5G56960 196 / 4e-56 basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161800 [exp] 108 / 2e-29 AT5G43650 124 / 9e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G077000 [exp] 91 / 5e-23 AT5G43650 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G148800 [exp] 49 / 5e-07 AT5G56960 204 / 4e-59 basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.018G141700 [exp] 39 / 0.0007 AT5G57150 205 / 4e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.003G128000 [exp] 39 / 0.001 AT5G41315 561 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008804 pacid=23177856 polypeptide=Lus10008804 locus=Lus10008804.g ID=Lus10008804.BGIv1.0 annot-version=v1.0 ATGATGGAATTCCAAAAGACAAACTGGGAATTCAATGGCAAGAAAGCGGGCAGCAGCAAACAGCATTCGTCATTTCGGCATATGATGAGCGAGAGATTGA GGAGGGAGAAGGAGAAGGAAGGCTACACCTCTCTTCTCTCCATCTTGCCCTCCGACACTAAGAAGAACAAGAACGCGATTGTGACAGGGGCGATGAGGAG GATAGAAGAGCTTGAGGGATACAAACAGATGCTGGAAAGAAGAATCATGGAGCTGGAAGAAGCTCAATTGTCTTTAAATCACAGTAGAGTTGCGAAGAAG AAGGTGAAGATCAAAGTTGGGAATGCAACAACATCATCTGGTTCTGGGTTAGGAGGAAGTTCAATGTTGGAGGTTCTATACGAATTGAAGGCGCTGGGTG CTGAACCCACCACTATCAAGTCCAAGATTTCACATGATCAGGGGTTTGAGGCAGTCATGGATGTGGAAACTCAGGCCGATGCTGAGAAGAAGAAGAAGAT TGTTTCTCGTATTCCCGGGAGCTTTGTCTTGGAAAGCTAG
AA sequence Show only first row Show all	>Lus10008804 pacid=23177856 polypeptide=Lus10008804 locus=Lus10008804.g ID=Lus10008804.BGIv1.0 annot-version=v1.0 MMEFQKTNWEFNGKKAGSSKQHSSFRHMMSERLRREKEKEGYTSLLSILPSDTKKNKNAIVTGAMRRIEELEGYKQMLERRIMELEEAQLSLNHSRVAKK KVKIKVGNATTSSGSGLGGSSMLEVLYELKALGAEPTTIKSKISHDQGFEAVMDVETQADAEKKKKIVSRIPGSFVLES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Lus10008804 [exp]	0	1
					Lus10025489 [exp]	8.4	0.7254
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10027396 [exp]	10.2	0.7270
					Lus10011947 [exp]	11.6	0.7580
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10027397 [exp]	24.4	0.6612
AT2G27550		ATC	centroradialis (.1)		Lus10015520 [exp]	29.0	0.6554
AT1G65440		GTB1	global transcription factor gr...		Lus10034231 [exp]	33.6	0.6440
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	57.3	0.6729
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	59.6	0.6478
					Lus10005608 [exp]	71.0	0.6436
					Lus10039418 [exp]	71.9	0.6508

Compare expression of checked genes

Lus10008804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.