Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23740 280 / 7e-89 RPS11-BETA ribosomal protein S11-beta (.1) AT3G48930 278 / 6e-88 EMB1080 embryo defective 1080, Nucleic acid-binding, OB-fold-like protein (.1) AT4G30800 272 / 6e-86 Nucleic acid-binding, OB-fold-like protein (.1) AT5G25270 155 / 4e-39 Ubiquitin-like superfamily protein (.1) AT5G42220 120 / 2e-27 Ubiquitin-like superfamily protein (.1) AT5G11080 81 / 6e-16 Ubiquitin-like superfamily protein (.1.2) AT2G17200 63 / 6e-10 DSK2 ubiquitin family protein (.1) AT2G17190 59 / 9e-09 ubiquitin family protein (.1) AT3G52590 54 / 2e-08 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G36170 54 / 2e-08 Ubiquitin supergroup;Ribosomal protein L40e (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040001 [exp] 899 / 0 AT5G25270 328 / 3e-102 Ubiquitin-like superfamily protein (.1) Lus10030113 [exp] 292 / 2e-93 AT5G23740 282 / 4e-99 ribosomal protein S11-beta (.1) Lus10001681 [exp] 292 / 3e-93 AT5G23740 281 / 7e-99 ribosomal protein S11-beta (.1) Lus10005348 [exp] 286 / 4e-91 AT5G23740 282 / 2e-99 ribosomal protein S11-beta (.1) Lus10041029 [exp] 285 / 1e-90 AT5G23740 281 / 6e-99 ribosomal protein S11-beta (.1) Lus10034563 [exp] 115 / 5e-27 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1) Lus10021830 [exp] 92 / 1e-18 AT5G42220 595 / 0.0 Ubiquitin-like superfamily protein (.1) Lus10014433 [exp] 59 / 1e-08 AT2G17200 567 / 0.0 ubiquitin family protein (.1) Lus10023934 [exp] 58 / 2e-08 AT2G17200 565 / 0.0 ubiquitin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G115500 [exp] 447 / 2e-144 AT5G25270 352 / 2e-111 Ubiquitin-like superfamily protein (.1) Potri.006G059700 [exp] 439 / 2e-141 AT5G25270 343 / 3e-108 Ubiquitin-like superfamily protein (.1) Potri.018G115400 [exp] 286 / 3e-91 AT5G23740 271 / 5e-95 ribosomal protein S11-beta (.1) Potri.014G053300 [exp] 281 / 3e-89 AT5G23740 271 / 1e-94 ribosomal protein S11-beta (.1) Potri.002G140400 [exp] 278 / 3e-88 AT5G23740 266 / 8e-93 ribosomal protein S11-beta (.1) Potri.002G013500 [exp] 120 / 2e-27 AT5G42220 602 / 0.0 Ubiquitin-like superfamily protein (.1) Potri.005G247900 [exp] 117 / 1e-26 AT5G42220 471 / 6e-152 Ubiquitin-like superfamily protein (.1) Potri.005G100200 [exp] 66 / 9e-11 AT2G17200 478 / 2e-164 ubiquitin family protein (.1) Potri.009G166000 [exp] 62 / 2e-09 AT2G17200 547 / 0.0 ubiquitin family protein (.1) Potri.004G194000 [exp] 56 / 7e-09 AT3G52590 210 / 3e-71 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0021 [flax] [poplar] OB PF00366 [flax] [poplar] Ribosomal_S17 Ribosomal protein S17
Representative CDS sequence Show only first row Show all	>Lus10008806 pacid=23151886 polypeptide=Lus10008806 locus=Lus10008806.g ID=Lus10008806.BGIv1.0 annot-version=v1.0 ATGGGAAGTGCTGCTGCTGAAAAAATTCCTAGGGCAGACGAGTCTGAAGGGCCTCAAGCAGCCATTGAGATTAAGATAAAGACATTGGACTCTCAAACTT ACACTTTGAAGGTCGACAAGCAGACGCCAGTTCCTGCTCTGAAAGAACAAATTGCTTCTGTTACTGGTGTTTTAACCGAACAACAACGTCTAATATGCCG TGGAAGAGTTCTGAAAGATGATCAGCTACTCTCTGCATATCATGTGGAAGATGGTCACACCTTGCATCTGGTGGTTAGACAACCAGTCCCACCATCTGCT GAGGGATTTTCCAATACCCAAGTAATCTACTATGACTTAACTGCAAGTTTCAACATTCCAACAGCCGATCCTACTTCAATTCCAAGTCGGAGTCACTCAG GTCCCAGCATTGTCATAGAAGCTTTCAGTATGCCTGATCAAAGAGATGGGGTTCCTCCTGAAATCAGTAGGATCGTCTCTGCTGTCCTTGGCTCCTTTGG ACTTTCTAGTCTCGGTAGTGGTGCTGAAGGTGGTGATGCAACATGGGACCATGCATTGGAAAGAATGTCATCTAGTGGTGGCACATTGGAGGTGAACCAA CAAGGTGGTACTAGGGGCCAGTCTGACAGAACACAAACTACTTTTGGACTTCCAGGAACTGCTGCTTCGTTGGGATCTCTGCATCCTCCTATCGTCTCTG CTGTCCTTGGCTCCTTTGGACTTTCTAGTCTCGGTAGTGGTGCTGAAGGTGGTGATGCAACATGGGACCATGCATTGGAAAGAATGTCATCTAGTGGTGG CACATTGGAGGTGAACCAACAAGGTGGTACTAGGGGCCAGTCTGACAGAGCACAAACTGGTTTTGGACTTCCAGGAGCTGCTTCTTCGTTGGGATCTCTG CATCCTCCTGTTATTCCTGATGCACTGACGACTTTGACCCAGTACCTTAGTCATATACGGCGTGAATTCAATCAAATTGGTAGAAGTGGTGAGAATAATT CCCAAACTGATGACACAAGCAGATCAGAGCAAAGAGATGGTACTTCCTCATCGGGAACTGGAAATGTAGAGGGCAGACTGCCGACACCAGCATCCTTGGC AGAAGTGATGTTGTCTAGTAGACAATTGCTCATTGAACAAGTTTCAGAAAGCTTACTGCAACTCGGAAGGCAATTAAACATTCAAGAAAGTATTACTGAT TCGTCAGCCCGGTTGACAGCTCAGGGTACAGCATGGAGAACAGGAGTTCAACTTCATAATTTGGGTGCATTTCTACTTGAATTGGGACGGACAACCATGA CTTTACGACTAGGTCAAGCCCCGTCAGAGGCTGTAGTGAATACTGGTCCTGCAGTTTTCATAAACTCCACCAGTCCAAATCCTCTCATGGTTCAGCCTCT TCCTTTTCAGCCGGGAGCAAGCCTTGGTGCAAGTTCAATGGGTTCTGTGCAGCCTGGATCTGGATTTGTTCCTCGTCGCATTGATATTCAGATACGTAGA GCAGGTTCGTCTAGCATATCATCTGCAGGTAACAATGAAGAACGAAGTGAGACTCCTCAACAGCAGCAGCTTGGGCAGAGAAATTCTGGATCAGGTGGTG CTACTACCGAGAACACAGGTAATCAGACAGCATCCAGAGTCATGGAAGGGTCTATGACTGTGGAGGGTGGAGTACGGGTGGTGCCAATTAGAACAGTGGT TGCAGCAGCAGTCCCTGCTTCATTTGGTCGCGTACCTTCTGATTCATCTGCTAATTCTCTAGGAATGTTCTATAATCCGCTTCTCGGAAGATTTCAGCAG GCAGGTTCTGGAACTGCAACCGCTGCTGAACAAAGATCTCGAACACATGGAAACCATCAATCTGTGAGTACACAAACTGAGCAACAGCCATCTCGTAATG ACGAAAATCAGGGAACTGATGCAACATCACCTAATCCGGAGCTCCGGCCAACTACTCGTAGCATAAGCATCAACATTCTATCGGCAGCAGGTGGGGCACG AACCAACCAGGAATCTGATGGACAAGTTCCGAGCAGCATTATGCAATTCCTAAGGTCCTTGTTTCCCGTTGGAGAAATACATGTGGAGGGTGCCAGCGGT CCAGGAACCACAGCTCCTGCTGCTGCTGCTGCTGAGAATGCAGGACCGTCAGCTGGTTCGGAAGAAGGATCGGAATCGATACCAACAAATGAAGGAATCT TCCTGTCGAATTTACTCCGCCAGATATTGCCAGTTGTATTTGAACAAGGTGGATCAGAGGCGGGGGATGGTCTCCAAGGAGAAGTAGCCTCCTCGGAAAA CCAGGCTGAGAACAACGAAGTAGGGACATCTCGTCGTCGGGATGATTCGTGTCCAAGCAGTCCGAGCTCAAAACGTCAAAAGACCGAGAAGGCATTTCTG AAGCAACCCAAGGTTTTCCTTAGCTCTAAGAAAACCGGCAAGGGAAAGAGACCTGGAAAGGGAGGCAACCGATTCTGGAAGAGCATCGGGTTGGGTTTCA AGACTCCCAGAGAAGCAACTGAAGGAACCTACATTGACAAGAAATGCCCTTTCACTGGCACCGTTTCTATCAGAGGCCGTATCTTGGCTGGAACATGCCA CAGTGCCAAAATGATGAGAACTATCATTGTTCGACGTAACTATCTTCATTTTGTGAAGAAATACCAGAGGTATGAGAAGAGACACTCAAATATCCCAGCT CATGTTTCACCATGCTTCCGTGTGAAGGAAGGAGACCATGTTATTATTGGACAATGCAGGCCTCTGTCAAAGACGGTGAGATTTAACGTGCTGAAAGTGA TTCCAGCTGGATCTTCTGGTGGTGGAAAGAAGGCCTTCACTGGGATGTAA
AA sequence Show only first row Show all	>Lus10008806 pacid=23151886 polypeptide=Lus10008806 locus=Lus10008806.g ID=Lus10008806.BGIv1.0 annot-version=v1.0 MGSAAAEKIPRADESEGPQAAIEIKIKTLDSQTYTLKVDKQTPVPALKEQIASVTGVLTEQQRLICRGRVLKDDQLLSAYHVEDGHTLHLVVRQPVPPSA EGFSNTQVIYYDLTASFNIPTADPTSIPSRSHSGPSIVIEAFSMPDQRDGVPPEISRIVSAVLGSFGLSSLGSGAEGGDATWDHALERMSSSGGTLEVNQ QGGTRGQSDRTQTTFGLPGTAASLGSLHPPIVSAVLGSFGLSSLGSGAEGGDATWDHALERMSSSGGTLEVNQQGGTRGQSDRAQTGFGLPGAASSLGSL HPPVIPDALTTLTQYLSHIRREFNQIGRSGENNSQTDDTSRSEQRDGTSSSGTGNVEGRLPTPASLAEVMLSSRQLLIEQVSESLLQLGRQLNIQESITD SSARLTAQGTAWRTGVQLHNLGAFLLELGRTTMTLRLGQAPSEAVVNTGPAVFINSTSPNPLMVQPLPFQPGASLGASSMGSVQPGSGFVPRRIDIQIRR AGSSSISSAGNNEERSETPQQQQLGQRNSGSGGATTENTGNQTASRVMEGSMTVEGGVRVVPIRTVVAAAVPASFGRVPSDSSANSLGMFYNPLLGRFQQ AGSGTATAAEQRSRTHGNHQSVSTQTEQQPSRNDENQGTDATSPNPELRPTTRSISINILSAAGGARTNQESDGQVPSSIMQFLRSLFPVGEIHVEGASG PGTTAPAAAAAENAGPSAGSEEGSESIPTNEGIFLSNLLRQILPVVFEQGGSEAGDGLQGEVASSENQAENNEVGTSRRRDDSCPSSPSSKRQKTEKAFL KQPKVFLSSKKTGKGKRPGKGGNRFWKSIGLGFKTPREATEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMMRTIIVRRNYLHFVKKYQRYEKRHSNIPA HVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10008806 [exp]	0	1
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	4.5	0.8463
AT1G72550			tRNA synthetase beta subunit f...		Lus10009382 [exp]	5.1	0.8159
AT5G46190			RNA-binding KH domain-containi...		Lus10023300 [exp]	6.5	0.8506
AT4G02120			CTP synthase family protein (....		Lus10025043 [exp]	7.9	0.8515
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	8.0	0.8332
AT2G40430			unknown protein		Lus10037530 [exp]	9.2	0.8353
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10014563 [exp]	9.3	0.8490
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10037326 [exp]	9.9	0.8338
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10035745 [exp]	11.2	0.8270
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	11.6	0.7853

Compare expression of checked genes

Lus10008806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.