Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25280 152 / 5e-46 serine-rich protein-related (.1.2) AT5G11090 146 / 7e-44 serine-rich protein-related (.1) AT5G20370 75 / 1e-16 serine-rich protein-related (.1) AT1G24577 43 / 9e-06 unknown protein AT1G67910 43 / 1e-05 unknown protein AT3G13227 42 / 2e-05 serine-rich protein-related (.1) AT3G56500 42 / 2e-05 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039998 [exp] 305 / 4e-106 AT5G25280 157 / 3e-48 serine-rich protein-related (.1.2) Lus10006660 [exp] 242 / 3e-81 AT5G25280 144 / 4e-43 serine-rich protein-related (.1.2) Lus10038100 [exp] 234 / 4e-78 AT5G25280 145 / 4e-43 serine-rich protein-related (.1.2) Lus10001946 [exp] 164 / 7e-51 AT5G11090 179 / 9e-57 serine-rich protein-related (.1) Lus10001928 [exp] 156 / 1e-47 AT5G11090 177 / 3e-56 serine-rich protein-related (.1) Lus10008811 [exp] 62 / 1e-12 AT5G11090 61 / 2e-12 serine-rich protein-related (.1) Lus10038101 [exp] 56 / 8e-10 AT5G11090 54 / 2e-09 serine-rich protein-related (.1) Lus10034901 [exp] 45 / 1e-06 AT1G67910 49 / 6e-09 unknown protein Lus10023632 [exp] 43 / 1e-05 AT1G67910 48 / 1e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G023300 [exp] 177 / 3e-56 AT5G11090 194 / 1e-62 serine-rich protein-related (.1) Potri.006G060800 [exp] 172 / 4e-54 AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2) Potri.006G258600 [exp] 166 / 1e-51 AT5G25280 181 / 1e-57 serine-rich protein-related (.1.2) Potri.018G120400 [exp] 165 / 4e-51 AT5G11090 126 / 3e-36 serine-rich protein-related (.1) Potri.006G060700 [exp] 73 / 1e-16 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.018G120300 [exp] 63 / 8e-13 AT5G11090 67 / 1e-14 serine-rich protein-related (.1) Potri.002G250700 [exp] 44 / 1e-05 AT3G56500 43 / 5e-06 serine-rich protein-related (.1) Potri.001G371400 [exp] 44 / 2e-05 AT5G55980 50 / 2e-08 serine-rich protein-related (.1) Potri.008G186200 [exp] 41 / 5e-05 AT1G67910 85 / 4e-23 unknown protein Potri.010G046700 [exp] 41 / 6e-05 AT1G67910 82 / 4e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008808 pacid=23151896 polypeptide=Lus10008808 locus=Lus10008808.g ID=Lus10008808.BGIv1.0 annot-version=v1.0 ATGGCAATTACTACAGCCACATCATCGGCAACCGGATCCTCCAGACGGTCTACAGCCTCGTCGAACCGGTCCTCGTACTCCCACTCCGGTAGATTCAGCC TGTCTTCTTATAATTCCCAGTATTCGTCGTCCTCAACCGGATTCGCCTCGTCCACTTCAAGTTTCGCCTCTCGTTCCACAACCTTCTTCGCCGGCAACAA CTACAGATCTACCTCTCCTCCTCGAGTAAGCATGTGCGCTCCGTCTATGTCCGCCTCGGCCGTCCGGTTCTCTCTAGACCGTTCTGTTTCTCCGAATCGG TCGATTTCTACGGTGAGTCCCTCCAGGTGCCGTCCACAGGTGGTGAGGAAGCAGCCCGCTCAGAAGAGGACGTGCATGTGCTCCCCGACGACGCATCCCG GATCATTCCGGTGTAGCCTCCACAAGAATCAGGGCAGTTCTCACTCTCCCTCTAGTTACGCGCCCAACAACCGCCTTAACGCGCGCAGATCTGCGATGAC GAACTCACTGGTGAGGATCGGTGGCGTGGAAGGGGGCGATTTGGTGAAGCGAGCCTTGGCGGCGTTGATACGGCCCTCGTCTCATCAGCAGAGGCGCCGC TCCGGTTTTCAGCCTCGCCCTAGCCGGCTCAGCGTCATGTCCAAGGCCGACAACGAGTCGCAGTTGTAA
AA sequence Show only first row Show all	>Lus10008808 pacid=23151896 polypeptide=Lus10008808 locus=Lus10008808.g ID=Lus10008808.BGIv1.0 annot-version=v1.0 MAITTATSSATGSSRRSTASSNRSSYSHSGRFSLSSYNSQYSSSSTGFASSTSSFASRSTTFFAGNNYRSTSPPRVSMCAPSMSASAVRFSLDRSVSPNR SISTVSPSRCRPQVVRKQPAQKRTCMCSPTTHPGSFRCSLHKNQGSSHSPSSYAPNNRLNARRSAMTNSLVRIGGVEGGDLVKRALAALIRPSSHQQRRR SGFQPRPSRLSVMSKADNESQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25280			serine-rich protein-related (....		Lus10008808 [exp]	0	1
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10020286 [exp]	1.0	0.7735
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	4.7	0.7636
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10026047 [exp]	6.5	0.7281
AT5G01370		ACI1	ALC-interacting protein 1 (.1)		Lus10002480 [exp]	7.7	0.7106
AT5G42000			ORMDL family protein (.1.2)		Lus10003209 [exp]	9.5	0.7059
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	14.0	0.7073
AT1G29970		RPL18AA	60S ribosomal protein L18A-1 (...		Lus10028130 [exp]	15.9	0.6894
AT4G08455			BTB/POZ domain-containing prot...		Lus10042763 [exp]	21.0	0.6994
AT5G43400			Uncharacterised conserved prot...		Lus10041147 [exp]	23.5	0.6596
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	24.2	0.6801

Compare expression of checked genes

Lus10008808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.