Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47810 677 / 0 PFK2 phosphofructokinase 2 (.1) AT4G32840 500 / 2e-175 PFK6 phosphofructokinase 6 (.1) AT4G26270 493 / 3e-172 PFK3 phosphofructokinase 3 (.1) AT5G61580 493 / 1e-171 PFK4 phosphofructokinase 4 (.1.2) AT5G56630 486 / 2e-169 PFK7 phosphofructokinase 7 (.1) AT4G29220 484 / 4e-169 PFK1 phosphofructokinase 1 (.1) AT2G22480 368 / 2e-122 PFK5 phosphofructokinase 5 (.1) AT4G04040 72 / 3e-13 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G12000 72 / 3e-13 Phosphofructokinase family protein (.1) AT1G20950 64 / 1e-10 Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005488 [exp] 511 / 8e-179 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 496 / 3e-174 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 496 / 1e-172 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 495 / 1e-172 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 496 / 8e-171 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10002648 [exp] 357 / 5e-118 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10012738 [exp] 353 / 9e-117 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10039993 [exp] 278 / 8e-93 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10039992 [exp] 84 / 3e-20 AT5G47810 89 / 6e-23 phosphofructokinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G002700 [exp] 713 / 0 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.018G069200 [exp] 495 / 6e-173 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.006G152600 [exp] 496 / 1e-172 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 489 / 2e-170 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.007G010300 [exp] 337 / 2e-110 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.006G235132 [exp] 251 / 2e-81 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.006G235066 [exp] 228 / 1e-72 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.001G079501 [exp] 127 / 3e-34 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.011G015900 [exp] 72 / 3e-13 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.006G281900 [exp] 72 / 3e-13 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10008812 pacid=23151893 polypeptide=Lus10008812 locus=Lus10008812.g ID=Lus10008812.BGIv1.0 annot-version=v1.0 ATGGCTATATCATCACCGGAACAAACCTCCACCAATCCAGCTGCCAACGCTGCTCCACCTTCCCCATTTAACCTCCGCAAACTCCCCCACTTAACCGACT ACCTCTTGGCGGACCAAATCGAAACCCGACCGAACCCACTCCAATCCAACCCCTACTACCACCCTTCCCATGGCTTCTACATCTCCCAATCCGACGTCGT TCTCCGCCACATTACTTCCGACCTCTCCAACAAGTACAATTCCACCACCCAACCCGCCTACCACCGGGCGGGGCCCCGCAAGGAGATCGTTTTCGACCCA ACCGCCGTCAGGGCCGCCATAGTAACCTGTGGCGGGTTATGCCCCGGGATGAACACCGTGATCAGGGAGGTTGTCATTGGGCTTTGGGAGCTTTACGGTG TCCGTCATATCTACGGTGTCTCCGCTGGTTACAGAGGATTTTACGACCGGGATCCTATCAAGCTAGATCCCAAGCTTGTACATAACTTGCACAAGAAGGG TGGCACCGTCCTCGAAACCTCCAGGGGAGGATTTGATCTTCAGAAGATCGTCGACGGCATTGAACGCCGTGGTTTCAATCAGCTGTATATAATCGGGGGA GACGGGACGATGCGTGGAGCAGTGAAGATATTTGATGAAATCCAGCGACGGAAACTGAACATTGCCGTTGCAGGGATCCCGAAAACAGTTGACAACGACA TAGGGATCATAGACCGATCTTTCGGGTTCCAAACAGCAGTGGAAATGGCACAACAAGCCATTGGCGCAGCTCACGTGGAAGCAGAGAGCGGAGTCAACGG AATAGGCCTAGTGAAGCTAATGGGACGAAGCACGGGCCACATTGCCCTCCACGCCACACTAAGCAGCCGTGACGTTGACTGTTGTCTAATTCCGGAAACT CCATTCTTCCTGGAAGGCAAACAAGGCCTGCTCGAGTTCATCGGGAGCAGGATCAAACAGAACGGCCACGCTGTAATTGTGGTAGCGGAGGGAGCCGGTC AGGAGCTGATACCCAGAAGCAAGGCTCAAAAGGAAGAGCGAGACGAATCGGGGAATCTGGTGTTCTTGGATGTGGGTTCATGGTTGAAATCCGAACTCAA GACGTGGTGGAATAGGGAACATCCTAATGAGCTCTTCACTGTGAAATACATTGATCCCACTTACATGATTCGAGCAGTGCCTGCTAATGCTGTTGATAAC CTCTATTGCACCCTGGTGGCTCACTCGGCTATCCATGGTGTCATGGCCGGTTATACCGGGTTCGTGTCAGGTCCCGTGAATGGCGTCTATGCATACATAC CGTTGGAGGAAGTTGCAGTAGCTAAAAATGAGGTGAATGTGAATGATCATAAGTGGGCATGGGTTAGATCAGTCACCAACCAGCCTGATTTCATTAAAGA GGTTGCATGA
AA sequence Show only first row Show all	>Lus10008812 pacid=23151893 polypeptide=Lus10008812 locus=Lus10008812.g ID=Lus10008812.BGIv1.0 annot-version=v1.0 MAISSPEQTSTNPAANAAPPSPFNLRKLPHLTDYLLADQIETRPNPLQSNPYYHPSHGFYISQSDVVLRHITSDLSNKYNSTTQPAYHRAGPRKEIVFDP TAVRAAIVTCGGLCPGMNTVIREVVIGLWELYGVRHIYGVSAGYRGFYDRDPIKLDPKLVHNLHKKGGTVLETSRGGFDLQKIVDGIERRGFNQLYIIGG DGTMRGAVKIFDEIQRRKLNIAVAGIPKTVDNDIGIIDRSFGFQTAVEMAQQAIGAAHVEAESGVNGIGLVKLMGRSTGHIALHATLSSRDVDCCLIPET PFFLEGKQGLLEFIGSRIKQNGHAVIVVAEGAGQELIPRSKAQKEERDESGNLVFLDVGSWLKSELKTWWNREHPNELFTVKYIDPTYMIRAVPANAVDN LYCTLVAHSAIHGVMAGYTGFVSGPVNGVYAYIPLEEVAVAKNEVNVNDHKWAWVRSVTNQPDFIKEVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10008812 [exp]	0	1
AT5G43150			unknown protein		Lus10010543 [exp]	1.4	0.9443
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10009564 [exp]	2.0	0.9199
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10039078 [exp]	3.5	0.9258
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	7.3	0.9016
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	9.2	0.9014
AT3G15480			Protein of unknown function (D...		Lus10043091 [exp]	9.5	0.9233
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10031640 [exp]	10.4	0.8857
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	10.5	0.8884
AT5G43150			unknown protein		Lus10004910 [exp]	11.2	0.8812
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	12.8	0.8794

Compare expression of checked genes

Lus10008812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.