Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12400 529 / 0 unknown protein AT2G25270 495 / 3e-171 unknown protein AT1G80540 373 / 1e-123 unknown protein AT1G71110 356 / 9e-117 unknown protein AT5G67550 63 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008028 [exp] 709 / 0 AT2G12400 641 / 0.0 unknown protein Lus10038102 [exp] 541 / 0 AT2G25270 468 / 5e-161 unknown protein Lus10001945 [exp] 528 / 0 AT2G25270 650 / 0.0 unknown protein Lus10013492 [exp] 368 / 2e-121 AT1G71110 645 / 0.0 unknown protein Lus10001929 [exp] 342 / 3e-111 AT2G25270 457 / 3e-156 unknown protein Lus10034641 [exp] 336 / 7e-109 AT1G71110 587 / 0.0 unknown protein Lus10007962 [exp] 319 / 9e-103 AT1G71110 578 / 0.0 unknown protein Lus10014341 [exp] 290 / 1e-91 AT2G25270 352 / 7e-116 unknown protein Lus10026050 [exp] 268 / 9e-84 AT2G25270 328 / 4e-107 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060600 [exp] 619 / 0 AT2G12400 579 / 0.0 unknown protein Potri.018G120200 [exp] 604 / 0 AT2G12400 596 / 0.0 unknown protein Potri.018G023200 [exp] 541 / 0 AT2G25270 595 / 0.0 unknown protein Potri.006G258700 [exp] 531 / 0 AT2G25270 590 / 0.0 unknown protein Potri.010G115500 [exp] 360 / 2e-118 AT1G71110 646 / 0.0 unknown protein Potri.007G132601 [exp] 145 / 2e-37 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 142 / 1e-36 AT5G67550 182 / 3e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008813 pacid=23151889 polypeptide=Lus10008813 locus=Lus10008813.g ID=Lus10008813.BGIv1.0 annot-version=v1.0 ATGGCGTCGACAACACCAAGCTCGATATTGTTGCTCCTCTTCCTTTCTTGTTTCGTTTTCACTTCTTCATTTCATCTTGTTTCTTCATCAGCAGCATCTC CCGAGTTTCCTGGCGCTGGACATGGCTCAAAATTGTCAGCTGCCATAAGACTGATGAATGATTATGAAGGGAATTCGACGACCACTGTGGTATTGGCTGA AGAGAGAACTCGAAGGAAAGACCCTTTGAATGACTACAGCCCCTACACTGGCGGCTTTAACATCAGTAGCCAACACTATTGGGCTTCAGTAAGTGCAACA GCAGCTCCATTCTTTCTTCTAGCTGGAGTCTGGTTTGTGGTGTTTGGGATATGTTTAGTCATCAGCTGCCTTTGCTTCTGCTGCTGCGTTAGAGACTCTT ATGGCTATTCACGATTCTGCTATGCACTCTCCCTCTTCTTTCTTATCCTTTTCACCGTTGCAGCTATTGTTGGATGTGTGGTTCTGTACACTGGACAAGG GAAGTTCTACAGCGTAACATCAGACACACTGGACTACGTTGTGAACCAGGCAGATGTTACAGCTGAAAGCCTGAAGAATGTGTCTGCTTATCTATCTGCA GCGAAGTCAGTTGGGGTTGAATCGGTTTTCTTGCCTGCTGATACGCAAGGTAAGCTCGATAGCCTTGTCGCCAAAGCCAATGCATCTGGCGCCACTTTGT CGAGCCGTACTCAGGAGAACAGGGAGAACATCATAGATGGGTTGAAGGGCGTGAGAATGGCTCTTGTAGTCCTTGCTGCCGTTATGCTTGGTTTGGCATT CCTTGGTTTCTTGTTCTCCATTCTTGGGATGACATGTCTTGTATACTTCCTAGTGATTCTAGGATGGATTCTTGTCGTTGGTACATTCATCTTGTGTGGT GTCTTTCTTCTTCTCCATAATGTTGTGGCGGACACATGTGTGGCCATGGATGACTGGGTCCAGCACCCAGCAGCCAAGACCGCCATGGACGATTTCATCC CATGTGTGGACAACGCTACAGCACAGGAGACACTGTTACAGTCCAAGCAAGTCACTTTCCAACTCTGTAACATGGTCGATAACGTACTCTCCAATTTCTC CAACCGTAATTTCCCGCCACTAGTCCCTCTTCCTTTCAACTTTAATCAATCTGGGCCCTTGGTTCCTCTCCTCTGCAACCCTTTCAACCCTGATCTGACG GACAAGACTTGCGCTGCTGGTGAAGTGGATTTCAGCAATGCTACTGAGGCATGGAAGGAATACGTATGCAACGCTTCAGAATCAGGAATATGTACAACAA CTGGTCGACTAACTCCAACACTGTATTCCCAAATGGCATCGGCTGTTAACGTAAGCTATGGACTCTTCCGCTACGGTCCGTTCCTCGTGGAGCTAGAAGA CTGCACCTTCGTCAGAAGAACATTTACGGACATCAACGCTTCATACTGTCCTAAACTTGGTAGGTACACCGAGTGGATCTACATCGGGTTGGTAATTGTT TCGGCCGCTGTCATGTTTTCGCTGATCTTCTGGGTTTTCTACGCCAGAGAGCGCCGTCACCGTGTCTACACCAAGCAGTTTATTACCCGACAACATGATA ACAAGGGTCCTTGA
AA sequence Show only first row Show all	>Lus10008813 pacid=23151889 polypeptide=Lus10008813 locus=Lus10008813.g ID=Lus10008813.BGIv1.0 annot-version=v1.0 MASTTPSSILLLLFLSCFVFTSSFHLVSSSAASPEFPGAGHGSKLSAAIRLMNDYEGNSTTTVVLAEERTRRKDPLNDYSPYTGGFNISSQHYWASVSAT AAPFFLLAGVWFVVFGICLVISCLCFCCCVRDSYGYSRFCYALSLFFLILFTVAAIVGCVVLYTGQGKFYSVTSDTLDYVVNQADVTAESLKNVSAYLSA AKSVGVESVFLPADTQGKLDSLVAKANASGATLSSRTQENRENIIDGLKGVRMALVVLAAVMLGLAFLGFLFSILGMTCLVYFLVILGWILVVGTFILCG VFLLLHNVVADTCVAMDDWVQHPAAKTAMDDFIPCVDNATAQETLLQSKQVTFQLCNMVDNVLSNFSNRNFPPLVPLPFNFNQSGPLVPLLCNPFNPDLT DKTCAAGEVDFSNATEAWKEYVCNASESGICTTTGRLTPTLYSQMASAVNVSYGLFRYGPFLVELEDCTFVRRTFTDINASYCPKLGRYTEWIYIGLVIV SAAVMFSLIFWVFYARERRHRVYTKQFITRQHDNKGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G12400			unknown protein		Lus10008813 [exp]	0	1
AT5G64380			Inositol monophosphatase famil...		Lus10020433 [exp]	1.4	0.9452
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10000856 [exp]	2.2	0.9182
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10024385 [exp]	3.2	0.9138
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	3.5	0.9213
AT3G53470			unknown protein		Lus10014016 [exp]	3.9	0.9300
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	5.7	0.8909
AT3G14470			NB-ARC domain-containing disea...		Lus10004126 [exp]	6.9	0.9166
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	8.1	0.9132
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10041904 [exp]	8.2	0.9347
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	9.7	0.9040

Compare expression of checked genes

Lus10008813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.