Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41040 451 / 7e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G78140 298 / 2e-99 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G20330 46 / 2e-05 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT5G13710 46 / 2e-05 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G76090 45 / 6e-05 SMT3 sterol methyltransferase 3 (.1) AT1G23360 42 / 0.0004 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013038 [exp] 50 / 8e-07 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 49 / 4e-06 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10023995 [exp] 45 / 4e-05 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10005625 [exp] 44 / 0.0001 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060400 [exp] 493 / 1e-176 AT2G41040 461 / 5e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.018G120000 [exp] 485 / 2e-173 AT2G41040 418 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G095100 [exp] 322 / 7e-109 AT1G78140 442 / 2e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G165700 [exp] 288 / 1e-95 AT1G78140 407 / 1e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G016300 [exp] 50 / 1e-06 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.005G245800 [exp] 49 / 2e-06 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.001G263700 [exp] 48 / 4e-06 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 46 / 2e-05 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.008G188600 [exp] 46 / 2e-05 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.016G056000 [exp] 44 / 0.0001 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10008815 pacid=23151892 polypeptide=Lus10008815 locus=Lus10008815.g ID=Lus10008815.BGIv1.0 annot-version=v1.0 ATGACTGCTGCTAATGCTATAGCTCTCTCCTCATTTTCTTTACTTCATCCTGCGTCCCAAGTTCCGCCAGCCGCTTTCCCTCAATGCTCTCACAGTTTTC CTCTTCCCAAGGCGTTTCCTCGTCGTCTCCGCCTTCCCTCCTCCGCTGCCACTATAATTCCGGCCGACTCAATATCACAATCGAGCCAGAATGAATATGT GGACGTATTTGCCTGTCCAGTGTGTTATGAACCTCTAATAAGAAAGGGCCCTTCTGGTTTTAACTTGGCAGCAATCTACCGGTCTGGCTTCAGGTGTGGG AGATGCAACAAAACATATTCTAGCAAATCCAACTACCTGGATCTTACTGTTACTGCTGGCATGAAGAGTTACACTGAAGCCATGCCAATAGGGACCGAGC TTTTCCGAAGTCCCCTGGTTTCATTCTTGTATGAGCGAGGATGGCGTCAGAGTTTCGATCGAAGTGGGTTCCCTGGTCCAGAAGAGGAGTTCAAAATGGC TCAGGAGTACTTCAAATCTACAGAAGGCGGCCTTCTAGTTGATGTCAGCTGTGGCAGTGGTTTGTTTTCCAGAAAGTTTGCCAAATCCGGAACCTATTCT AAAGTTGTTGCACTTGATTTTTCTGAAAACATGCTTCGCCAATGCTTTGATTTCATAAATGCTGACGGTACTATCTCAGACGCAAATCTGGCGCTGGTGA GAGCAGATGTTTCAAGGCTCCCTTTCGCCTCAGGTTCAGTTGATGCTGTCCATGCTGGTGCTGCCTTGCATTGTTGGCCAGCTCCTTCCAATGCTATTTC TGAAATATGTCGTGTATTGAGAAGTGGCGGAGTCTTTGTTGGAACGACTTTTCTTCGGTACACTTCATCGATGCCAGTAATAGCACGGCCTCTCAGACAG AGATTTCTGGCAAGGTACAATTACTTCATAGAGGAGGAAATTGAGGAATTGTGCAAATCCTGTGGTCTTACAAACTACTCCATGAAAGTTCAGCAGTCCT TCATCATGTTCTCAGCTCAGAAACCTTGA
AA sequence Show only first row Show all	>Lus10008815 pacid=23151892 polypeptide=Lus10008815 locus=Lus10008815.g ID=Lus10008815.BGIv1.0 annot-version=v1.0 MTAANAIALSSFSLLHPASQVPPAAFPQCSHSFPLPKAFPRRLRLPSSAATIIPADSISQSSQNEYVDVFACPVCYEPLIRKGPSGFNLAAIYRSGFRCG RCNKTYSSKSNYLDLTVTAGMKSYTEAMPIGTELFRSPLVSFLYERGWRQSFDRSGFPGPEEEFKMAQEYFKSTEGGLLVDVSCGSGLFSRKFAKSGTYS KVVALDFSENMLRQCFDFINADGTISDANLALVRADVSRLPFASGSVDAVHAGAALHCWPAPSNAISEICRVLRSGGVFVGTTFLRYTSSMPVIARPLRQ RFLARYNYFIEEEIEELCKSCGLTNYSMKVQQSFIMFSAQKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41040			S-adenosyl-L-methionine-depend...		Lus10008815 [exp]	0	1
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	2.4	0.9545
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	2.8	0.9379
AT5G50100			Putative thiol-disulphide oxid...		Lus10042142 [exp]	3.5	0.9104
AT4G02920			unknown protein		Lus10029640 [exp]	3.7	0.9467
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	3.7	0.9289
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	6.9	0.9394
AT5G24850		CRY3	cryptochrome 3 (.1)		Lus10020878 [exp]	7.9	0.8977
AT1G69450			Early-responsive to dehydratio...		Lus10030431 [exp]	8.0	0.9036
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10010331 [exp]	8.2	0.8648
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	8.4	0.9338

Compare expression of checked genes

Lus10008815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.