Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12550 560 / 0 NUB1 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039971 [exp] 836 / 0 AT2G12550 563 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061500 [exp] 644 / 0 AT2G12550 577 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.018G118143 [exp] 631 / 0 AT2G12550 572 / 0.0 homolog of human NUB1, ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10008818 pacid=23151891 polypeptide=Lus10008818 locus=Lus10008818.g ID=Lus10008818.BGIv1.0 annot-version=v1.0 ATGTCGAAGCTGAGAGTTGCAGGGACATGGTCAGGGATTCTGGACGAAGTAGACTTGGAGAATTGGACGGTACCAATTTTGAGAAACGAAGTCGCTAAGC GATCAAGCGTTTCCCCTGCCTCAATCAATTTGATTTGCGCCGGCAGGATACTCAAAGACGACGATGGTACGGTGAAGCTCTCCCAGCTGGGCATCAAAAG CAATTCCAAGGTTCTGGCCAGCAAGGTTGCCGTCGACGAAGGGAAATCCTTGAAGGATGAGTTGGTCGCCCAGGAGGATCGCAATCGGAGACTCAATCGA GTCAAGGCAGCTGTGAGTGCATTGTCGAAAAGGCACGCAGAGGGTGCACTTCCGCTGGAGGACTTCAACATCGAAATTGAAGACCAACTTGGCAATAAAC TGTACTTATCAGAAGATGATCGACAGGCACTGATGATGGGTCTGATGCTCCATACAAATGGGAAAGGACTTATCAGAAAAAGAATGTTTAGGGATGCTTT AGAAGTGCTGACTATGGCAGAGGAATCCTTCTCTCTTTGCGATCAAAAGACTGTTGAGCGTGTTGATAACATTGCAATGCTTCAAATGGACATGGTGTGG TGCTATTTCATGCTGAAAGACATTGCTTGTCTCACAGTTGCTGGAGCACGTCTCGAAAAGGCCAGAGAAGGATTTGAACGTTCTCATGGCAAAGATGCTT CTCGTCTCAAACTTCTTCAAGCTGGCAACTCTTCAGGGCTTGCGTTATATTTGAGATTGGAACTACTCGAAGCCATAGTGGCATATCATAGCGGTCAGCT TGAGAAATCCAGGAGATATTTGCTGTCTGCACAGACTAAATTCAAACAGCTAGAAATATCAGATGAAGCTTTATCGGTTGTCATGGGGATGGGTTTCAAA GAAAACGAAGCAAAGAGGGCACTTAGAATCAACACTCAAGATATTGGACGTGCAGTTGAGTTTCTAGTTGAGGAGAAGGCACGGAAAGCACAGAAACGAG AAGAAGACATTCGTCGAGAAACTGAAATCAAGGAGCAAAAAAGGTACGGTGTAACTCCCTTAAAGAAAGCGGTGGATATTGAACTGCTCAAGACATTGGT CTCCATAGGGTATGAGAAGGAACTTGCTGCTGAAGCTCTTCGACGTAACGAAAATGACACTCAGAAAGCATTGGACGATTTGACAAATCCAGAAGCTAAT GCTAACATCCAGAACTACATTGAATCAAGAAAAGCCAAAAGACAGCGGAAACATGCAGACTCTCAAATCCAACAACTTGCGTCCATGGGGTTTGACATGT CTCAAGTCGTTACAGCAGTCCAAGGTGGTGGCTCAGTGGAGGAAATAATGCAGCAACTCCTCCAACAAGGACCAGGTCCAAACTCTGAAGCTGCTATGGA AGCTGCAAGCAATGCTGATGCTGATGCTAATGCTAATGCTGATGCTTCTAACCCGCAACTCACGGACCATGAAATTCTGGAGGAAGAAATGGAAAATACC TCAGTGGAGCAGCGGGATGCTGAAATAGAGGATGAGATAGCGGGCGAAGTAGCACAGGGAGATGCTTTATCAGATTATGACATTGATGTAACCACAGAAG GGGAAGCCATTAATGAGTACTTGGCATTGCTTGATTCAACAGGTAGTACCAGTGGAACAGCTTCAACTTCTGGCTAA
AA sequence Show only first row Show all	>Lus10008818 pacid=23151891 polypeptide=Lus10008818 locus=Lus10008818.g ID=Lus10008818.BGIv1.0 annot-version=v1.0 MSKLRVAGTWSGILDEVDLENWTVPILRNEVAKRSSVSPASINLICAGRILKDDDGTVKLSQLGIKSNSKVLASKVAVDEGKSLKDELVAQEDRNRRLNR VKAAVSALSKRHAEGALPLEDFNIEIEDQLGNKLYLSEDDRQALMMGLMLHTNGKGLIRKRMFRDALEVLTMAEESFSLCDQKTVERVDNIAMLQMDMVW CYFMLKDIACLTVAGARLEKAREGFERSHGKDASRLKLLQAGNSSGLALYLRLELLEAIVAYHSGQLEKSRRYLLSAQTKFKQLEISDEALSVVMGMGFK ENEAKRALRINTQDIGRAVEFLVEEKARKAQKREEDIRRETEIKEQKRYGVTPLKKAVDIELLKTLVSIGYEKELAAEALRRNENDTQKALDDLTNPEAN ANIQNYIESRKAKRQRKHADSQIQQLASMGFDMSQVVTAVQGGGSVEEIMQQLLQQGPGPNSEAAMEAASNADADANANADASNPQLTDHEILEEEMENT SVEQRDAEIEDEIAGEVAQGDALSDYDIDVTTEGEAINEYLALLDSTGSTSGTASTSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Lus10008818 [exp]	0	1
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	4.5	0.9282
AT3G09110			Protein of unknown function (D...		Lus10003166 [exp]	9.8	0.8643
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040761 [exp]	16.4	0.9006
AT2G03270			DNA-binding protein, putative ...		Lus10026309 [exp]	18.1	0.8841
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	18.3	0.8973
AT3G53990			Adenine nucleotide alpha hydro...		Lus10017207 [exp]	23.1	0.8886
AT4G15420			Ubiquitin fusion degradation U...		Lus10031538 [exp]	23.9	0.8657
AT4G35240			Protein of unknown function (D...		Lus10023949 [exp]	24.5	0.8595
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	28.5	0.8911
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	29.8	0.8889

Compare expression of checked genes

Lus10008818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.