Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35080 350 / 5e-122 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039972 [exp] 553 / 0 AT5G35080 357 / 2e-124 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061600 [exp] 452 / 3e-162 AT5G35080 343 / 5e-119 unknown protein Potri.018G118200 [exp] 437 / 5e-156 AT5G35080 333 / 5e-115 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0226 [flax] [poplar] M6PR PF07915 [flax] [poplar] PRKCSH Glucosidase II beta subunit-like protein
Representative CDS sequence Show only first row Show all	>Lus10008819 pacid=23151877 polypeptide=Lus10008819 locus=Lus10008819.g ID=Lus10008819.BGIv1.0 annot-version=v1.0 ATGAAATCTTTGTGGTTAGTGGCTCTTCTTCTAGCGTCTGTCTCCAGCTACGTTCTAGCCGATCAGATCCTCCCAGCTCACGTTGGTGGTTCATTGAGTC GCAGCTCTCGTGATCCCAAGTATAAGATCGAGTTCCACCCAGAAGACTCTCCATTTCATCCTGACGATGATCAAGAGTCTATTGCTATGCCTGATAACAA CGGGAATAAATACATATGCTACTTGCCTAAGATTGAGAAAGCCAAGAGTGGGAAGCCAATTAATCACTTGAACATAAGCAGCATGATTGTGGAAACTGAG CAACGTGCTAAACTGAAGACACCTGATGAGTTACTTGAAGTTTTGAAAGACCGATGTTTTATCAGGCAAGAAGGTTGGTGGTCTTATGAGTTCTGCTATG AGAAAAAGTTGAGACAGCTTCACGTGGAAGATGATAAGGTGGTTCAAGAATTCGTCTTGGGTGTTTACGATGAAGAGGCCACAGCTGCATTCAACCAGAA CCTATCCGACATTTCGACCCTTAAGGATCCTCGTTCAAAAGATGCATCTCAAAGATACCATGCTCATCAGTACACAAATGGGACTCTCTGCGACCTCACG AATCAGCCTCGGGAAACTGAGGTGAGATTTGTATGCTCTGAGCCAAGAGCTATGATTAGTTCCATCACGGAGCTATCAACTTGCAAGTACGCACTCACAG TACACTGTCCGATGCTTTGCAAGCATCCACTGTTCCAAGAAGAGAGACCAGTGTGGCATACCATCAACTGCAATGTGTTGCCCAAGGAAAGCAAAGTTGA GAAAGAGAGGAAGGCTGAGGATGAGAAACAAATCTATATGGTTACTGAGGTTAAGACTCCAGCCAATGACGAGCTGGTGGAGTGA
AA sequence Show only first row Show all	>Lus10008819 pacid=23151877 polypeptide=Lus10008819 locus=Lus10008819.g ID=Lus10008819.BGIv1.0 annot-version=v1.0 MKSLWLVALLLASVSSYVLADQILPAHVGGSLSRSSRDPKYKIEFHPEDSPFHPDDDQESIAMPDNNGNKYICYLPKIEKAKSGKPINHLNISSMIVETE QRAKLKTPDELLEVLKDRCFIRQEGWWSYEFCYEKKLRQLHVEDDKVVQEFVLGVYDEEATAAFNQNLSDISTLKDPRSKDASQRYHAHQYTNGTLCDLT NQPRETEVRFVCSEPRAMISSITELSTCKYALTVHCPMLCKHPLFQEERPVWHTINCNVLPKESKVEKERKAEDEKQIYMVTEVKTPANDELVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35080			unknown protein		Lus10008819 [exp]	0	1
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028753 [exp]	2.0	0.8508
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	2.2	0.8807
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	3.2	0.8777
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10030294 [exp]	4.2	0.8420
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031815 [exp]	4.9	0.8280
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	5.0	0.8426
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10036241 [exp]	5.4	0.7979
AT3G51580			unknown protein		Lus10025224 [exp]	5.7	0.8307
AT2G46000			unknown protein		Lus10017790 [exp]	5.9	0.7928
AT3G06170			Serinc-domain containing serin...		Lus10034023 [exp]	6.5	0.8396

Compare expression of checked genes

Lus10008819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.