Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G11890 197 / 2e-63 adenylate cyclases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024472 [exp] 200 / 2e-64 AT2G11890 189 / 2e-60 adenylate cyclases (.1.2) Lus10002992 [exp] 194 / 5e-62 AT2G11890 190 / 7e-61 adenylate cyclases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121300 [exp] 255 / 1e-86 AT2G11890 218 / 1e-72 adenylate cyclases (.1.2) Potri.006G062000 [exp] 248 / 1e-83 AT2G11890 212 / 8e-70 adenylate cyclases (.1.2) Potri.003G198200 [exp] 204 / 1e-66 AT2G11890 176 / 1e-55 adenylate cyclases (.1.2) Potri.T125606 [exp] 204 / 1e-66 AT2G11890 175 / 1e-55 adenylate cyclases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0273 [flax] [poplar] CYTH PF01928 [flax] [poplar] CYTH CYTH domain
Representative CDS sequence Show only first row Show all	>Lus10008820 pacid=23151878 polypeptide=Lus10008820 locus=Lus10008820.g ID=Lus10008820.BGIv1.0 annot-version=v1.0 ATGCTGAGAAGGAAACCCACCAAAATCGAAGTGACAATCGACGACAAAGACGAACTCGAAGAAGCCCGCCGACGATCCGCCGCCGCCGCTGCCGCTGCCG CTGCCACTACAACTAACACCTCTGCAGCCTCTTTCCTTGCTCACCTACGATTCAAAACCCTAATTTCCCAATCCCACTTGAAAACAGTCAACCAGCACAA CCTATTCTTCGACACTCCCACCTCCGCCTTATCCACCAAGCGAGCTGTTCTTCGTCTCCGATTCCTTGACGATACCCGCTGTGTCGTTTCTCTCAAGGCG AAGGCCGTTCTAGTTAACGGGGTGAGTCGGGTCGAGGAAGACGAGGAGGAGATCGACCCCGGTATGGGTCGAGCGTGCGCTGATGACCCGACGAAGCTGG GATCGATTGATTCGAGGATTGTGAGGCGGTGTAAGGATGAGTTTGGGGAGGGGAAAAGCGAGATTGAGTTCGTTTGTTTGGGAGGGTTTGAGAATGTGAG GGATGTTTATGATTGGAGAGGGTTTGTGTTGGAAGTGGACGAGACTAAGTATGCGTTTGGGGTCTGCTATGAGATTGAGTGTGAAAGTGAGGATCCTGAG AGGGTTAAGAAGGAGCTTGAGGAGTTTCTGAAAGAGAATGGGATTGACTATAAGTACTCTCTGGTGTCCAAGTTTGCCGCTTTTCGATCTGGAAAGCTTC CATCCTAG
AA sequence Show only first row Show all	>Lus10008820 pacid=23151878 polypeptide=Lus10008820 locus=Lus10008820.g ID=Lus10008820.BGIv1.0 annot-version=v1.0 MLRRKPTKIEVTIDDKDELEEARRRSAAAAAAAAATTTNTSAASFLAHLRFKTLISQSHLKTVNQHNLFFDTPTSALSTKRAVLRLRFLDDTRCVVSLKA KAVLVNGVSRVEEDEEEIDPGMGRACADDPTKLGSIDSRIVRRCKDEFGEGKSEIEFVCLGGFENVRDVYDWRGFVLEVDETKYAFGVCYEIECESEDPE RVKKELEEFLKENGIDYKYSLVSKFAAFRSGKLPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G11890			adenylate cyclases (.1.2)		Lus10008820 [exp]	0	1
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	3.0	0.9654
AT1G70780			unknown protein		Lus10019143 [exp]	5.3	0.9377
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	5.5	0.9527
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	7.7	0.9471
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	7.9	0.9517
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	8.7	0.9467
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	9.2	0.9407
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Lus10026963 [exp]	9.2	0.9059
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	9.5	0.9442
AT2G16250			Leucine-rich repeat protein ki...		Lus10023570 [exp]	9.5	0.9267

Compare expression of checked genes

Lus10008820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.