Plant FIBer expression Database

Lus10008821 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22145 40 / 0.0002 ECA1 gametogenesis related family protein (.1)
AT2G27315 40 / 0.0003 Protein of unknown function (DUF1278) (.1)
AT2G22155 38 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G062100
[exp]
47 / 9e-07 AT3G48675 48 / 4e-08 Protein of unknown function (DUF1278) (.1)
PFAM info
Representative CDS sequence
>Lus10008821 pacid=23151900 polypeptide=Lus10008821 locus=Lus10008821.g ID=Lus10008821.BGIv1.0 annot-version=v1.0
ATGGGGCATGCCAGCGTAATGGTCGGTGGGAAATACATCAAGATCGGATCGGCATGTTGCGAAGTCGTAAATAGCATTAGCGACATATGCTGGAAGCTGA
TGTACCCGAGATGCCCCATTGCTGTGTTCTTCAGAGGAGTGTGTTCCATCTTCGGAAAGGCTAGTGGGCCCCCGACCTTGAATAAGTCGTCGATGTGCAT
GGGTGCGCTCAGGAAGGTGCCAGGGTGCCTCAAGCAGATCAATGAGACCGTATCTATCGCCACGGTTGCCATGATTAGAGGGTTTAAGAGCCACCACGAG
ATGCACGAGAATGTCGAAGAAATGGGTTCGTCTTGCTGCAAGGTGATCGACGGGATTAGCGATCCCTGCTGGCAGGAAATGTACCCAGCACACCCTCAGT
TCTCTCAGGTTGTTAAAGGTGTCTGTTCTGTCGTCGGAAGGTCCGTCGGTCGTGGGGGCAAGCTGTTTAAGGGAGGTAACCGAAAGTTTGGTGATGGTGA
CAAAGAAGCAGAGGAATCTCCTTCGGTCACCACCATCGCTCTCATAAACTGCGGCTCCGGCTCCACGTCTCGCCAGAATCAAAACGGTTCTGGGTCCGCG
GCACTCAGCCACGAAGACAACAGCGACAACACTGGTCAAAGGACCGGACCCCCTAGTCCAAGGCTCCGCGACAACACCGAATCAGAAAGAGGAACCCGAC
GGGGATAG
AA sequence
>Lus10008821 pacid=23151900 polypeptide=Lus10008821 locus=Lus10008821.g ID=Lus10008821.BGIv1.0 annot-version=v1.0
MGHASVMVGGKYIKIGSACCEVVNSISDICWKLMYPRCPIAVFFRGVCSIFGKASGPPTLNKSSMCMGALRKVPGCLKQINETVSIATVAMIRGFKSHHE
MHENVEEMGSSCCKVIDGISDPCWQEMYPAHPQFSQVVKGVCSVVGRSVGRGGKLFKGGNRKFGDGDKEAEESPSVTTIALINCGSGSTSRQNQNGSGSA
ALSHEDNSDNTGQRTGPPSPRLRDNTESERGTRRG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G54062 unknown protein Lus10008821
[exp]
0 1
AT5G13660 unknown protein Lus10005963
[exp]
6.5 0.8676
Lus10006164
[exp]
9.2 0.8676
AT5G55050 GDSL-like Lipase/Acylhydrolase... Lus10030409
[exp]
11.2 0.8676
AT4G17810 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers sup... Lus10000481
[exp]
13.0 0.8676
AT4G16295 SPH1 S-protein homologue 1 (.1) Lus10000683
[exp]
14.5 0.8676
Lus10001790
[exp]
15.9 0.8676
AT5G20260 Exostosin family protein (.1) Lus10039981
[exp]
17.1 0.8676
AT1G73700 MATE efflux family protein (.1... Lus10042705
[exp]
18.3 0.8676
AT5G42180 PER64 peroxidase 64, Peroxidase supe... Lus10005614
[exp]
18.5 0.7489
AT4G38260 Protein of unknown function (D... Lus10016023
[exp]
19.7 0.8658

Lus10008821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.