Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54000 132 / 1e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G49390 129 / 1e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20400 120 / 3e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20550 119 / 6e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 71 / 1e-14 ATSRG1, SRG1 senescence-related gene 1 (.1) AT2G38240 67 / 1e-13 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 67 / 2e-13 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G25300 67 / 3e-13 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17010 66 / 8e-13 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 65 / 1e-12 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039975 [exp] 180 / 3e-56 AT1G49390 309 / 5e-104 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008826 [exp] 159 / 4e-48 AT1G49390 298 / 1e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008824 [exp] 113 / 2e-30 AT1G49390 410 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016145 [exp] 77 / 3e-17 AT5G20550 225 / 2e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006518 [exp] 73 / 2e-15 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10004808 [exp] 71 / 9e-15 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011981 [exp] 70 / 2e-14 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10014134 [exp] 69 / 5e-14 AT4G22880 559 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10011985 [exp] 69 / 7e-14 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121700 [exp] 120 / 5e-33 AT5G20400 426 / 8e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G121800 [exp] 118 / 3e-32 AT5G54000 407 / 2e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G062500 [exp] 115 / 2e-31 AT5G20400 432 / 2e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030451 [exp] 100 / 2e-25 AT1G49390 321 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030500 [exp] 100 / 2e-25 AT1G49390 321 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030400 [exp] 99 / 4e-25 AT1G49390 320 / 2e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 71 / 1e-14 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 68 / 7e-14 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G381700 [exp] 67 / 1e-13 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.010G023550 [exp] 65 / 2e-13 AT3G21420 210 / 6e-68 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008822 pacid=23151897 polypeptide=Lus10008822 locus=Lus10008822.g ID=Lus10008822.BGIv1.0 annot-version=v1.0 ATGTACCCCAACAGCATAAACGAAGGCCAATCCCCTTTTCTTCTTCCAGAGATAGACCTTCCAATCATTGATGCCAGCCACTTCATAACTACTTCTTCAG ACACACAGCAGAATTATCCAACCAAACAACTTGGAAACCTCCGTGCAGCTCTCAGCTCACTCGGCTGCATAATGATAAAGAACCATGGAGTGGAGACTTG TCTTCTGGACAAAGTGCTGCTGATGTTCAAGCAATTCGCTGCGCTTCCAACGCAAGAGAAGGCGAAATACGAGAGGGAAATCGAGGGTTTTGAAGGATTT GGAAGTGACCGTTTAGTTACACAAGTAGTGGTGCATGACTGGTGTGCTAGATTCCGGCTCACACTACTGCCTCAAGAGAAGAGACAGTTAAAGTATTGGC CCAAACATCCACTCGATTTCTGTACAGTTATGGATGAGTACAGCAGGAAGCTGCAAGTGCTCCACGATTCGATCCTGAAGGCCATGGAGAGGTTGGAAGT GGCGGCTGTCCGCCACACTTAA
AA sequence Show only first row Show all	>Lus10008822 pacid=23151897 polypeptide=Lus10008822 locus=Lus10008822.g ID=Lus10008822.BGIv1.0 annot-version=v1.0 MYPNSINEGQSPFLLPEIDLPIIDASHFITTSSDTQQNYPTKQLGNLRAALSSLGCIMIKNHGVETCLLDKVLLMFKQFAALPTQEKAKYEREIEGFEGF GSDRLVTQVVVHDWCARFRLTLLPQEKRQLKYWPKHPLDFCTVMDEYSRKLQVLHDSILKAMERLEVAAVRHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54000			2-oxoglutarate (2OG) and Fe(II...		Lus10008822 [exp]	0	1
AT2G42760			unknown protein		Lus10019924 [exp]	2.0	0.9042
AT1G01390			UDP-Glycosyltransferase superf...		Lus10037115 [exp]	3.2	0.8523
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10022196 [exp]	4.7	0.8712
					Lus10018648 [exp]	4.9	0.8603
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10011002 [exp]	5.3	0.7670
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10018647 [exp]	5.7	0.8539
AT1G79720			Eukaryotic aspartyl protease f...		Lus10041621 [exp]	9.5	0.8013
					Lus10017791 [exp]	20.2	0.7931
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	22.9	0.8080
AT1G05870			Protein of unknown function (D...		Lus10025562 [exp]	25.7	0.7772

Compare expression of checked genes

Lus10008822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.