Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34940 676 / 0 ATGUS3 glucuronidase 3 (.1.2.3) AT5G61250 535 / 0 ATGUS1 glucuronidase 1 (.1.2) AT5G07830 511 / 3e-177 ATGUS2 glucuronidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038109 [exp] 884 / 0 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10008038 [exp] 866 / 0 AT5G34940 671 / 0.0 glucuronidase 3 (.1.2.3) Lus10001923 [exp] 547 / 0 AT5G34940 535 / 0.0 glucuronidase 3 (.1.2.3) Lus10015737 [exp] 541 / 0 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 530 / 0 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 514 / 1e-178 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 511 / 1e-177 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10036963 [exp] 476 / 1e-163 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 472 / 4e-162 AT5G07830 528 / 0.0 glucuronidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121500 [exp] 788 / 0 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 777 / 0 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 657 / 0 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.010G160800 [exp] 520 / 0 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 501 / 4e-173 AT5G07830 731 / 0.0 glucuronidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008823 pacid=23151899 polypeptide=Lus10008823 locus=Lus10008823.g ID=Lus10008823.BGIv1.0 annot-version=v1.0 ATGGGTTCTCAGAGTTCGGTTATGGGTTTAGTTGTTCTGCTCTGTTTATTGTGCTGCTGCACCTTTGTTCCTGTGAGTTCACAAGGTGGTGGGAATGGGA ATGGAAATGGAACTTCATCTTCATCTTCTTCTGTTGTTGAAGGAATGATAGTTGTGGATGGAAGCTCTGCCATTGGAAGAACTGACGAAGATTTCATTTG TGCAACTTTGGATTGGTGGCCTCCTGAGAAATGTGACTATGGGACTTGCGCCTGGGATCATGCTTCTCTTGTCAATCTCGACCTTAATGACCAAATTCTG TTGAAGGCCATTCAGGCTTTTTCACCATTGAAGATCAGGCTGGGAGGGACATTACAGGACAAAGTCATATACGACACACCAGACAACCACCAACCCTGTC CTCAGTTTGTCAAGAACACATCTGAGCTCTTTGGTTTCACTCCAGGTTGCTTGCCCATGTACAGATGGGATGAACTCAATTCATTCTTCAATAAGTCTGG GGCTAAGATAATATTTGGGCTGAATGCACTACTAGGAAGGACCATGCAGCCTGATGGTTCGGAAGCTGGACCATGGAACTACACCAATGCTCAATCTTTC ATGAATTATACAGTTACACATAATTATTCTATTCATGGTTGGGAGCTTGGAAATGAGTTGAGTGGAAGTGGAGTGGGAACCAGAGTTTCTGCAGATCAGT ATGCTTCTGATACAATCTCCCTGCATGACATCGTCGACAAAATTTACAATGGAATTGAACCAAAGCCGTTAGTTCTGGCACCCGGTGGATTCTATGATTC GAATTGGTTCCAGACATTGATAAACAAAACTGGAAATGCATTGGATGTTGTGACTCACCACATCTACAATCTCGGTCCAGGAGTAGATGAACATCTGATT GAGAAAATTCTAGACCCTACTGTTCTGGATAACGTGATTGGTACGTTTCAAGGTCTGCAGAGTCTCCTGAGAAGCTCTCCAAGTTCAGCAACTGCTTGGG TTGGTGAGTCTGGAGGGGCTTACAACAGTGGTCACAACCTAGTCTCAAATGCATTTGTGTACAGCTTTTGGTACTTGGATCAGCTTGCTCTCTCTGCCTC ACATGACACCAAGACTTACTGTAGGCAGTCTTTGATCGGTGGAAACTACGGCCTACTCAACACCACTACATTTGTCCCAAACCCTGACTATTACAGTGCT CTTCTCTGGCATCAATTGATGGGACGAAACGCCTTGTCCACTAGCGTCTCAGCATCTAAAAAGCTTCGTACTTATGCTCACTGCTCGAAACACTCCAAAA GGTTTACAGTGCTGCTGATCAACCTGGACAACAGCACAACGTTCCACCTTAATGTAGGGCTCAACAGAACCTCGTCGCTTCTTTTCCAATACAAACACAA GAAGAAGTCCCACCACAGGTTTGAACACAGAACAAACATCGTTAAGCTTCCTCGTCGTTCCAAGATTGGTGCAATGAGAGATGAATACCATCTGACAGCA AAAGATGGCAACCTACAAAGCCAAACCATGCTACTTAATGGCAACATTTTGACTCTAAATTCACAAGGGGACATACCTGCATTGGAGCCCATACAAGTTA ATTCTTCTGCACCAATCGTAGTGGCTCCTCTTTCGATTGTGTTCGCTCGTCTCCCGTATGCGCTTCCTGCTTGCAAGTAG
AA sequence Show only first row Show all	>Lus10008823 pacid=23151899 polypeptide=Lus10008823 locus=Lus10008823.g ID=Lus10008823.BGIv1.0 annot-version=v1.0 MGSQSSVMGLVVLLCLLCCCTFVPVSSQGGGNGNGNGTSSSSSSVVEGMIVVDGSSAIGRTDEDFICATLDWWPPEKCDYGTCAWDHASLVNLDLNDQIL LKAIQAFSPLKIRLGGTLQDKVIYDTPDNHQPCPQFVKNTSELFGFTPGCLPMYRWDELNSFFNKSGAKIIFGLNALLGRTMQPDGSEAGPWNYTNAQSF MNYTVTHNYSIHGWELGNELSGSGVGTRVSADQYASDTISLHDIVDKIYNGIEPKPLVLAPGGFYDSNWFQTLINKTGNALDVVTHHIYNLGPGVDEHLI EKILDPTVLDNVIGTFQGLQSLLRSSPSSATAWVGESGGAYNSGHNLVSNAFVYSFWYLDQLALSASHDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSA LLWHQLMGRNALSTSVSASKKLRTYAHCSKHSKRFTVLLINLDNSTTFHLNVGLNRTSSLLFQYKHKKKSHHRFEHRTNIVKLPRRSKIGAMRDEYHLTA KDGNLQSQTMLLNGNILTLNSQGDIPALEPIQVNSSAPIVVAPLSIVFARLPYALPACK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008823 [exp]	0	1
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007528 [exp]	3.7	0.9301
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	5.3	0.8530
					Lus10000999 [exp]	5.5	0.8522
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10040847 [exp]	8.4	0.9237
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10004656 [exp]	9.0	0.9084
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032549 [exp]	15.4	0.8500
AT2G41770			Protein of unknown function (D...		Lus10031076 [exp]	16.5	0.8949
AT2G41770			Protein of unknown function (D...		Lus10035458 [exp]	20.7	0.8888
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10041069 [exp]	26.2	0.8492
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	26.7	0.8705

Compare expression of checked genes

Lus10008823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.