Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20400 410 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G49390 410 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G20550 386 / 2e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G54000 380 / 9e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 246 / 3e-79 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G17010 239 / 2e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G78550 233 / 4e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 231 / 3e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G21420 231 / 3e-73 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 221 / 1e-69 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039975 [exp] 322 / 4e-109 AT1G49390 309 / 5e-104 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008826 [exp] 313 / 2e-105 AT1G49390 298 / 1e-99 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10026173 [exp] 246 / 7e-79 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10006518 [exp] 229 / 4e-72 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022292 [exp] 226 / 2e-71 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10011981 [exp] 221 / 2e-69 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10005037 [exp] 221 / 6e-69 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030995 [exp] 218 / 5e-68 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10028068 [exp] 217 / 5e-68 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121700 [exp] 527 / 0 AT5G20400 426 / 8e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G062500 [exp] 518 / 0 AT5G20400 432 / 2e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G121800 [exp] 435 / 2e-153 AT5G54000 407 / 2e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030400 [exp] 339 / 1e-115 AT1G49390 320 / 2e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030451 [exp] 332 / 5e-113 AT1G49390 321 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G030500 [exp] 332 / 5e-113 AT1G49390 321 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G381700 [exp] 240 / 9e-77 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G382400 [exp] 227 / 6e-72 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G355100 [exp] 225 / 6e-71 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.006G101200 [exp] 224 / 1e-70 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10008824 pacid=23151890 polypeptide=Lus10008824 locus=Lus10008824.g ID=Lus10008824.BGIv1.0 annot-version=v1.0 ATGGGTTCTGGTTCAATGGCAACCCCAGTTCAGGAGCTGGCAATCGGCGGCCAGGACCCTTCTGAGAGATACAATTACAGAGGCAACGATGCCGGATCCC TAAACGCATCAGTTCCATTGATTGAGATTCCAGTTATCGACGTCGGTCGATTAATATCTTCTCCGTCAACTGAAAGTGACCAACTTGAGAAACTCAGCTT CGCTCTCTCTACTTGGGGATGCTTCCAGGTAGTGAATCATGGAATGACAAGTTCATTCGTGGACAGAGTTCATGAAATCTCAGATCAATTCTTTGGGTTG CCAAAGGAAGAGAAGCATAAATATATCAGAGAATCTGATAGCATTGAAGGGTATGGTACTGACATGATTGTAGCAGAGAACCAGACACTTGACTGGATTG ACAGACTGTATCTCACCTTAAGCCCCCCAAACCACATCCAGCTCAGATTTTGGCCACAAAACCCTCAATCATTCAGGGAAACACTTGAGGAATATGGGAA GAAGATAGGAGAACTGAATAAGATTCTGTTAAAAGCCATGGCAAAATCACTCAACTTGGAGGAGAAGTGCTTCTTAGACCAGTATGGAGTAGAAGGGGCA CTAATGACAGCAAGATTCAACCTATACCCACCATGTCCAAGGCCGGATCAGATCATCGGAGTGAAGCCACACACGGATGCATCAGCCCTCACTTTCCTTT TGCAGGATAAACAAGTTGGAGGTTTACAATTCCTCAAAGGCAATGAATGGTTCAGAGTTCCCATCATTCCACACGCTCTTCTGGTTAACGTTGGTGATCA AGTTGAGATAATGAGCAATGGTGTGTTCAAGAGCCCCGTGCATAGGGTAGTGACCAACTCGGAGAAGGAGAGGTACAGTCTTGCAGTGTTCTGCATTCCT TGTTCGGACAAGGAAATCAAACCAGCGGAAGGGTTGATCAGTGAAACAAGGCCAGCCTTGTACAAGAAGGTGAAGGATTATGTTAGTATTTACTTTGAGT ATTACCAAAGAGGAAGAAGACCAATCGAGGCAGCCATGATTTGA
AA sequence Show only first row Show all	>Lus10008824 pacid=23151890 polypeptide=Lus10008824 locus=Lus10008824.g ID=Lus10008824.BGIv1.0 annot-version=v1.0 MGSGSMATPVQELAIGGQDPSERYNYRGNDAGSLNASVPLIEIPVIDVGRLISSPSTESDQLEKLSFALSTWGCFQVVNHGMTSSFVDRVHEISDQFFGL PKEEKHKYIRESDSIEGYGTDMIVAENQTLDWIDRLYLTLSPPNHIQLRFWPQNPQSFRETLEEYGKKIGELNKILLKAMAKSLNLEEKCFLDQYGVEGA LMTARFNLYPPCPRPDQIIGVKPHTDASALTFLLQDKQVGGLQFLKGNEWFRVPIIPHALLVNVGDQVEIMSNGVFKSPVHRVVTNSEKERYSLAVFCIP CSDKEIKPAEGLISETRPALYKKVKDYVSIYFEYYQRGRRPIEAAMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008824 [exp]	0	1
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Lus10009246 [exp]	1.7	0.9367
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	3.9	0.9386
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	6.5	0.9376
AT1G52140			unknown protein		Lus10006040 [exp]	7.2	0.9343
AT1G54740			Protein of unknown function (D...		Lus10035353 [exp]	8.9	0.8771
AT5G16950			unknown protein		Lus10021093 [exp]	10.0	0.9062
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10031623 [exp]	11.4	0.9233
AT5G50375		CPI1	cyclopropyl isomerase (.1.2)		Lus10038969 [exp]	11.6	0.9125
AT4G33740			unknown protein		Lus10020507 [exp]	13.0	0.9228
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	13.6	0.9177

Compare expression of checked genes

Lus10008824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.