Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06150 613 / 0 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G29230 404 / 1e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 377 / 9e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 374 / 6e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 363 / 2e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 360 / 3e-118 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 366 / 1e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 356 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G13410 348 / 2e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 355 / 3e-114 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039974 [exp] 1098 / 0 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10029344 [exp] 409 / 4e-136 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 399 / 3e-131 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 383 / 1e-125 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 379 / 6e-124 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 371 / 9e-123 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 371 / 9e-123 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 374 / 9e-122 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 368 / 2e-120 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258766 [exp] 785 / 0 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G105700 [exp] 413 / 5e-137 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 410 / 1e-135 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 402 / 9e-135 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 399 / 9e-132 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 394 / 2e-130 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G125500 [exp] 393 / 3e-130 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G035900 [exp] 392 / 2e-129 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 378 / 4e-125 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G223900 [exp] 371 / 2e-122 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008825 pacid=23151881 polypeptide=Lus10008825 locus=Lus10008825.g ID=Lus10008825.BGIv1.0 annot-version=v1.0 ATGAGTTTTCGAGCCAGCTGCGTAGTTACCCACTTAAAGCATTGCTCCAAGATCAGCGATGTGGAGTCGGCCTTTGCCCGCATGATCAAAGTTGCGGCAC ACCAAGACTGTTTCCTGATGAACCAATTCATCACAGCTTGTTCCGCACTTGGTGCCACGGATCAGGCTGTTTTGGCATGTTCCCAGATGGACAATCCGAA TGTTTTCGTGTTCAACGCGATGCTGAAAGGATTCGTCGAAAACCATAGACCGATTGAGGCTGTTGAATACTATGTTCGGATGTTGAGAGCTCAGTTGTCG TCGACGAGTTACACCTTTTCGTCATTGGTTAAAGCGTGCTGCTTGGTAAGTGATCCGAGGGTTGGGGAATCTGTTCATGGACAAATTTTGATAAACGGGC TTTCTTCGAGTGTGTTTGTCTGCACTACTTTGATTGAGTTTTACTATGGTTTCGAAAGGATTTTTTATTCCCTCAAGGTGTTCGACGAAATGCCTGAGAG AGATGTCTTTGCGTGGACAACGATGGTTTCTTGTCTTGCTCGTGCAGGGGAAGTGAGTTACGCAAGGAGGTTGTTTGATAGGATGCCTGAAAGGAATATA GCTACTTGGAATACGATGTTGGATGGATATGCACGGTTGAAGGATGTCATGTCTGCTGAGCAGCTGTTTAGTCAAATGCTCGCCAAAGATGTTATTTCGT GGACTACTATGATTAACTGCTATGCTCAAAATGAGAAATTTAGAGCAGCAATAGGAGTCTTTTCTGAGATGACTAGCGATGGGATTATTCCTGATGAAGT GACCTTAGCAAGTGTGATTTCGGCTTGTGCCCATCTTGGAGCTCTTGACTTAGGCAAGGAAATACACCACTGGGTAATGCTGAATGGGTTTGTTGTTGAT GTCTATATTGGGTCTGCTTTAATTGATATGTATGCAAAATGTGGGTGCCTAGAAAGGTCTCTTTTGGTGTTCTACAAATTGAGAGATAGAAACCTTTTCT GTTGGAATTCCATTATCGATGGGCTGGCCGTTCACGGATATGCAGAAGAAGCGCTAGCAATGTTTTCCAAGATGGAGAGGGAGGGAATTAAGCCAAATGG GGTGACTTTCATCAGTGTCCTAAGTGCTTGTGCTCATTCAGGACTTGTTGAAGAAGGTCGCAAGTGGTTCAACATCATGACTCTTAAATATTCGTGCCAT CCTCAGCTAGAACACTATGGATGCATGGTTGATCTATTGAGCAAAGCTGGTTTGCTTGAAGAAGCACTTCGCTTTATAAGAAGCATGAACGTGGAACCGA ATGCCGTTATTTGGGGAGCATTGTTGGGGGGTTCTAAGCTTCACAGAGACATAGAAATTGCCCAAATTGCTGTCAAGGAATTGATGGTGTTGGAGCCAGC CAACAGTGGGCATTATGCTCTTTTGGTTAGCTTGCATGCTCAGGTTGACCGGTGGAGTGATGCTGCAAAAGTTAGATGGAAAATGAAGGAACTAGGAGTC GAGAAGTGTTTTCCTGGGTCCAGCTGGATTGAGCTGGATAAGAGAATTCATCAGTTTGCAGCATCAGATAAGTCTCACCCATCTTCGGATATCATATTGG CTGCCTTGAGTGAATTGGATGGGCAGTTAAAACTAGCCGCAAATACACCTCCTGAACTCTTATCATTTATAAATTTTAATTTCTTATAG
AA sequence Show only first row Show all	>Lus10008825 pacid=23151881 polypeptide=Lus10008825 locus=Lus10008825.g ID=Lus10008825.BGIv1.0 annot-version=v1.0 MSFRASCVVTHLKHCSKISDVESAFARMIKVAAHQDCFLMNQFITACSALGATDQAVLACSQMDNPNVFVFNAMLKGFVENHRPIEAVEYYVRMLRAQLS STSYTFSSLVKACCLVSDPRVGESVHGQILINGLSSSVFVCTTLIEFYYGFERIFYSLKVFDEMPERDVFAWTTMVSCLARAGEVSYARRLFDRMPERNI ATWNTMLDGYARLKDVMSAEQLFSQMLAKDVISWTTMINCYAQNEKFRAAIGVFSEMTSDGIIPDEVTLASVISACAHLGALDLGKEIHHWVMLNGFVVD VYIGSALIDMYAKCGCLERSLLVFYKLRDRNLFCWNSIIDGLAVHGYAEEALAMFSKMEREGIKPNGVTFISVLSACAHSGLVEEGRKWFNIMTLKYSCH PQLEHYGCMVDLLSKAGLLEEALRFIRSMNVEPNAVIWGALLGGSKLHRDIEIAQIAVKELMVLEPANSGHYALLVSLHAQVDRWSDAAKVRWKMKELGV EKCFPGSSWIELDKRIHQFAASDKSHPSSDIILAALSELDGQLKLAANTPPELLSFINFNFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10008825 [exp]	0	1
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	1.0	0.7915
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10037390 [exp]	16.2	0.7414
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10006083 [exp]	21.3	0.5612
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10025624 [exp]	28.7	0.6978
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10019489 [exp]	28.9	0.7324
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	37.0	0.6403
AT5G24320			Transducin/WD40 repeat-like su...		Lus10007783 [exp]	45.8	0.6840
AT1G52640			Pentatricopeptide repeat (PPR)...		Lus10030887 [exp]	48.1	0.6944
AT5G23300		PYRD	pyrimidine d (.1)		Lus10041623 [exp]	48.5	0.6824
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10032979 [exp]	81.0	0.6123

Compare expression of checked genes

Lus10008825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.