Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48200 848 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039976 [exp] 1456 / 0 AT3G48200 1074 / 0.0 unknown protein Lus10002461 [exp] 680 / 0 AT3G48200 425 / 1e-139 unknown protein Lus10035212 [exp] 369 / 7e-111 AT3G48200 476 / 3e-149 unknown protein Lus10032047 [exp] 349 / 1e-103 AT3G48200 457 / 2e-142 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079000 [exp] 1020 / 0 AT3G48200 1134 / 0.0 unknown protein Potri.012G087400 [exp] 981 / 0 AT3G48200 1075 / 0.0 unknown protein Potri.001G330000 [exp] 418 / 7e-129 AT3G48200 492 / 3e-155 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008827 pacid=23151884 polypeptide=Lus10008827 locus=Lus10008827.g ID=Lus10008827.BGIv1.0 annot-version=v1.0 ATGTATCAATCATTCTCTCATTTCTTCACCACATTCTGCTTCACTCTTTTTAATTCCGTACTGCATCTGGATGCTATGTTATACACGTTATTCCCTGCAG ACATTGTTCCTCCAACTGCTTCTATCACTTCATCATCACCTTTCACAAATTCCTTAAATGTATCTGTAAATATTACTCTTACTGAGCCATGCAACGCCGG AGGAGAAGGAGAAGAAGGTTTTAGATGCTCATCAGTGGATTCTTGCGATCTGCTAGTGTATGGCGGTGGCCAAGTGATACCATCTTCATTCACCATTCTG GAACCCTACCTCAAGTATTCTCTTGTGGTGGCTTTATCTCATGGTTCCGCATACGGGCGAGTCGTGTTGACAATGAACAAGAACTTTTGTACTGATGCTG CTGGAAACATGTTTACTAGAACAGATACATCTACTTCTTTTGTGCGGTTTGGTGAGTTCAACATTCATTTCTATAGAAGGAGTGTGTTTGTTGACATGAG AACCCTTGTCCCGGAAAGGCTACTTGAGCTTCAAGGTGAAACTAGGACCGTTGAAGCAACTAACAGCGCCAATAACCTCAAGCTGCATCTCTACTTCTCA GAGCCTATCATGAACTCGTCCGCTCAAGTTCTAAATTCTCTCAACATAAGTGGAGGTGCACTGCTTTCGCTAGGAGGAGAAAGCCTTGGCAACCGTCGAT TTGGTTTTACAGTTGTAAATGTTTCTGCCATTTCCATTGTCACAGTTGCACTTCGTTCGGACTCAATTATAAGCATACCCGGGACTCCTGTCTCTCCAAT TGCACCAGCCACTTTCCTCTTTGATTCCGAAAAGCTTGCTGTGAAGCTAAGTACGACGTCTAACACAAGGACACGGGAGCACAACATTCCGGTATCGATA AAGTTCATGAAGCCGGTATTTGGTTTCAACTCTTCCTTTCTATCCATCTCTGGAGGAAAATTGCAGAGGCAAGCCAAGCCGCCTTTCACAGTTCATATAA GTAGGAGCAGTTACATCACAGAGGTGCAAGCTGATGGTGACATAGTATCTATTAGTGTTCCGGAAAATATAACTTCTGATATTGCTGGAAACAAGAATCT CCCATCCAATGTTCTACAAGTGAGGCACTATTCCATACCCAAAATCTCCCAGCCTTCAGTCCGTTGGAGCATTTTCAAGGCATCTGCTCTCTTGACATCT GAGCCGACGAGGAGTCTTTTCAGAATTGCGTGCTACATTCAGATCTTCGCTCTATCTAGATGGCTGGCTGTTATGCTACCAGCTGAATACTATGAACTCT CAGTTGGCCTTCAATGGAGTATTCCATACTTCACTAGTCTCCCTTGGGAATCTGGGAGTTCTCACCCATTAATGTCCTCAGTACCAAATTCATCCATTTC TAGGTTCCACAACCAAGAAATTCCAAAGCAAATACAACTGGAAAAGGACAGCTTGAGCAAGGCTGCTTCAGCATATGGATTGCCTCTCACTCCAATGGAA TACAGATTCTTTTTCGAGAGCGAGGACATTAAGCCGGAAGCAGACTATATTATGGAATCACAAGGTTCGAATGGATGGACGGATTTTCACAGAAGCATGT TCTGGCTAGCAGTGATTTTTGGTTGTCTGATACTGCTACATGCCATACTTTTCTTGATCATCAAGTACAAGAAGGTAGATGTTCAAAGGCACATCAGCTA TGGAGCATTGGTATTCCCAAGATTCGAAATAGCCCTCCTGGTTTTTGCATTGCCTTGCATCTGTAGGGCCTCAACTAGCTTGGTGAAAGGTCAAACTGTG TCAGGCAGTGTAGTTGGGATTCTGCTGCTTTCAGTGGTTGGTGTGTTCCTTCTTTGCTTGCTAGTTTTCCTTTCAATTGGAATCACTCTTGGAAAGCTAC TTCAGTACAAGGAAGTTCATCAAGTAGGACAGAAATTCCACTGGTACCAGGAGCTCATTCGAGTCACCTTAGGGCCAGGGAAGAGAGGCCAATGGACATG GAAAGACCAACCGAACTCTGTCCAGCTAACGAAATACGGTACATTGTTGGAAGACCTTAGAGGTCCTCCAAAGTACATGCTTTCTCAGATAGGAAATGGC AGTATTACAAGAAATTACGGGGAACAAATCATTGCATCAGATGACGAAACTGAAGATGCAGAAGCTCCTTTCATCCAGAAACTCTTCGGAATCCTCAGAA TCTACTACACATTGCTCGAATCCATTAAGCGAGTCACTTTAGGAATCGTTGCTGGTGCATACGGCAACACGTGGTCATCGAGAGCTCCAAGCACGATTTT ACTGTGGTTCACCTCATTCCAGCTCTTCTTCATTGTTCTCAAGAAGCCCTTCATAAAGAAGAAGGTGCAGTTAGTTGAGATCATCTCCCTTTCCTGCCAA GTGATTACGTTCGCAATTTGTCTCATTCTCTCGAAGATGGAACCACTTTCCATCAAAGGCGAAACCAGAGTGGGAATCGTCATGGTTTTGGTGTTTTTAA CCGGTTTCGTAGCTCATACAGCGAATGAATGGTATGCATTGTACAGACAAATAAAGCGTTTAGACCCGGAAGTGAAATCATGGTCAAACGGAGTGAAGAC GGCAGCGATCGGGTTCCTCATTATCTTCGCCCCAAAGAAAGCACGTGATTACTTGGAAAGCAAGCTACCCACGGACCAAGCAGGAGAGAAAGAGACGGGT GGTGTCGGAGAGGGGGGCTCATCGGCAGAGAGGAGCTATAAGAGCTCAGGGACCACGCCAGTGGTGGGTAGACCATGGACGCTAAGAGAATTGGCAAAGG CAAGTTTTACTAGAGAAGGAAGTGGGACTGCTGGAGGTGGAAGTGGATTTCCAACTGATCCTTCAAGCAGTAGGACAAAATGGAGTGGGCTATAG
AA sequence Show only first row Show all	>Lus10008827 pacid=23151884 polypeptide=Lus10008827 locus=Lus10008827.g ID=Lus10008827.BGIv1.0 annot-version=v1.0 MYQSFSHFFTTFCFTLFNSVLHLDAMLYTLFPADIVPPTASITSSSPFTNSLNVSVNITLTEPCNAGGEGEEGFRCSSVDSCDLLVYGGGQVIPSSFTIL EPYLKYSLVVALSHGSAYGRVVLTMNKNFCTDAAGNMFTRTDTSTSFVRFGEFNIHFYRRSVFVDMRTLVPERLLELQGETRTVEATNSANNLKLHLYFS EPIMNSSAQVLNSLNISGGALLSLGGESLGNRRFGFTVVNVSAISIVTVALRSDSIISIPGTPVSPIAPATFLFDSEKLAVKLSTTSNTRTREHNIPVSI KFMKPVFGFNSSFLSISGGKLQRQAKPPFTVHISRSSYITEVQADGDIVSISVPENITSDIAGNKNLPSNVLQVRHYSIPKISQPSVRWSIFKASALLTS EPTRSLFRIACYIQIFALSRWLAVMLPAEYYELSVGLQWSIPYFTSLPWESGSSHPLMSSVPNSSISRFHNQEIPKQIQLEKDSLSKAASAYGLPLTPME YRFFFESEDIKPEADYIMESQGSNGWTDFHRSMFWLAVIFGCLILLHAILFLIIKYKKVDVQRHISYGALVFPRFEIALLVFALPCICRASTSLVKGQTV SGSVVGILLLSVVGVFLLCLLVFLSIGITLGKLLQYKEVHQVGQKFHWYQELIRVTLGPGKRGQWTWKDQPNSVQLTKYGTLLEDLRGPPKYMLSQIGNG SITRNYGEQIIASDDETEDAEAPFIQKLFGILRIYYTLLESIKRVTLGIVAGAYGNTWSSRAPSTILLWFTSFQLFFIVLKKPFIKKKVQLVEIISLSCQ VITFAICLILSKMEPLSIKGETRVGIVMVLVFLTGFVAHTANEWYALYRQIKRLDPEVKSWSNGVKTAAIGFLIIFAPKKARDYLESKLPTDQAGEKETG GVGEGGSSAERSYKSSGTTPVVGRPWTLRELAKASFTREGSGTAGGGSGFPTDPSSSRTKWSGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48200			unknown protein		Lus10008827 [exp]	0	1
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10010842 [exp]	1.4	0.8948
AT1G26930			Galactose oxidase/kelch repeat...		Lus10024239 [exp]	5.9	0.8618
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10041471 [exp]	6.2	0.8184
AT1G23850			unknown protein		Lus10032153 [exp]	12.4	0.8694
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	13.4	0.8340
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10009430 [exp]	14.0	0.8415
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10042865 [exp]	14.4	0.8254
AT2G38510			MATE efflux family protein (.1...		Lus10025156 [exp]	15.3	0.8471
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	15.7	0.8661
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10022103 [exp]	15.7	0.8176

Compare expression of checked genes

Lus10008827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.