Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15690 697 / 0 FUGU5, AtVHP1;1, AVP-3, ATAVP3, AVP1 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) AT1G16780 310 / 4e-94 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase family protein (.1) AT1G78920 306 / 3e-93 AtVHP2;1, AVPL1, AVP2 vacuolar H+-pyrophosphatase 2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, vacuolar H+-pyrophosphatase 2, vacuolar H+-pyrophosphatase 2 (.1), vacuolar H+-pyrophosphatase 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039977 [exp] 719 / 0 AT1G15690 1381 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10038111 [exp] 711 / 0 AT1G15690 1385 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10038114 [exp] 711 / 0 AT1G15690 1170 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008044 [exp] 564 / 0 AT1G15690 561 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008042 [exp] 428 / 4e-138 AT1G15690 422 / 1e-134 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10033345 [exp] 360 / 8e-113 AT1G16780 1174 / 0.0 Inorganic H pyrophosphatase family protein (.1) Lus10034800 [exp] 318 / 2e-97 AT1G16780 1434 / 0.0 Inorganic H pyrophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063000 [exp] 713 / 0 AT1G15690 1336 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.018G119500 [exp] 707 / 0 AT1G15690 1367 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.013G009400 [exp] 679 / 0 AT1G15690 1237 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.005G018700 [exp] 678 / 0 AT1G15690 1248 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.010G254200 [exp] 310 / 1e-94 AT1G16780 1266 / 0.0 Inorganic H pyrophosphatase family protein (.1) Potri.008G003502 [exp] 117 / 4e-29 AT1G16780 477 / 3e-164 Inorganic H pyrophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03030 [flax] [poplar] H_PPase Inorganic H+ pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10008828 pacid=23151879 polypeptide=Lus10008828 locus=Lus10008828.g ID=Lus10008828.BGIv1.0 annot-version=v1.0 ATGGTTTCCACCACGGTTCTGCCAGATCTCGGCACCGAAATACTGATTCCCGTGTGCGCCGTCATCGGGATTGCCTTTGCTATTTTCCAGTGGATCCTCG TTTCGTCTATCAAGCTCACCTCCGGCGGCGGACGGGATGGCGCCGCCGACAATAATGGTTACTCCGAACACCTGATCGAGGAGGAGGAAGGCGGGAACGA TCACACTGTCGTCGCCAAATGCGCGGAGATTCAAAACGCCATTTCTGAGGGGGCAACCTCGTTCCTTTTCACCGAGTACAAGTATGTTGGCTACTTCATG ATTGCGTTTGCCGTCCTCATTTTCGTTTTCCTGGGATCCGTTGAGGGATTCAGCACAAGTCATCATCCTTGCACCTATGATTCAACGAAGATGTGCAAGC CTGCTCTGGCTACTGCTGCCTTCAGCACCTTCTCGTTCGTGCTCGGTGCTATCACTTCAGTAGTTTCTGGCTTCCTCGGAATGAAAATTGCTACTTATGC AAATGCTAGGACAACCCTTGAGGCAAGGAAAGGAGTAGGGAAGGCTTTCATTGTAGCTTTCAGATCCGGAGCAGTCATGGGTTTCCTCCTTGCTGCAAAT GGTTTACTGGTTCTTTACATTACCATCAACCTCTTCAAACTGTACTATGGAGATGACTGGGGTGGCCTGTTTGAAGCTATTACCGGTTATGGTCTTGGAG GCTCTTCCATGGCACTTTTTGGTAGAGTTGGAGGTGGAATTTACACCAAGGCTGCGGATGTTGGTGCTGATCTTGTTGGAAAAGTTGAGAGGAATATTCC TGAGGATGACCCAAGAAATCCAGCTGTGATTGCTGATAATGTTGGTGATAATGTGGGTGATATTGCCGGTATGGGATCCGATCTTTTTGGCTCATATGCT GAGGCATCTTGTGCTGCCCTAGTTGTTGCATCCATCTCATCTTTTGGCATTAATCACGAGCAACTATTCTTGTGCGTTGCTGTTGGCCTATGGGCGGGAC TAATTATTGGATTTGTAACTGAGTACTACACCAGCAATGCATACAGCCCAGTTCAAGACGTTGCTGATTCTTGCCGAACTGGAGCTGCCACAAATGTTAT TTTTGGACTTGCATTGGGATACAAATCCGTCATCATTCCAATATTTGCCATTGCAGTTAGCATTTTCGTCAGTTTCAGCTTTGCTGCTATGTATGGTATT GCGGTAGCTGCACTCGGAATGTTGAGCACGATTGCTACTGGTTTGGCCATTGATGCGTATGGTCCTATTAGCGATAATGCAGGAGGTATTGCAGAGATGG CAGGAATGAGCCACAAAATCCGAGAGAGAACTGATGCTCTTGATGCTGCTGGGAACACCACTGCTGCCATTGGCAAGGGGTTCGCTATCGGTTCTGCAGC ACTGGTCTCATTGGCTCTGTTCGGTGCCTTTGTGAGCCGTGCATCAATATCAACAGTAGATGTGTTGACACCGAAAGTATTTATAGGTTTGATCGTGGGT GCTATGCTTCCTTACTGGTTCTCTGCGATGACGATGAAGAGCGTTGGAAGTGCAGCACTTAAGATGGTTGAGGAAGTCCGGAGGCAATTCAACACCATTC CTGGACTGATGGAGGGTACTGCAAAGCCTGATTATGCTACCTGCGTCAAGATTTCAACTGATGCCTCCATCAAGGAAATGATCCCACCTGGTGCACTTGT CATGCTCACACCCCTCATTGTTGGCATCTTCTTCGGAGTCGAAACTTTGTCTGGAGTCCTTGCTGGATCCCTTGTCTCCGGTGTACAGGTTGCGATCTCT GCATCAAACACTGGTGGCGCATGGGACAATGCCAAGAAGTACATAGAGGCGGGTGCCTCGGAGCATGCAAGAACCCTTGGCCCGAAAGGATCAGACCCGC ATAAAGCAGCAGTCATCGGTGACACCATTGGAGACCCATTGAAGGACACATCTGGTCCATCACTCAATATCCTCATAAAGCTCATGGCAGTTGAGTCCCT TGTGTTCGCCCCATTCTTCGCAACTCATGGAGGCATTCTTTTCAAGCTATAA
AA sequence Show only first row Show all	>Lus10008828 pacid=23151879 polypeptide=Lus10008828 locus=Lus10008828.g ID=Lus10008828.BGIv1.0 annot-version=v1.0 MVSTTVLPDLGTEILIPVCAVIGIAFAIFQWILVSSIKLTSGGGRDGAADNNGYSEHLIEEEEGGNDHTVVAKCAEIQNAISEGATSFLFTEYKYVGYFM IAFAVLIFVFLGSVEGFSTSHHPCTYDSTKMCKPALATAAFSTFSFVLGAITSVVSGFLGMKIATYANARTTLEARKGVGKAFIVAFRSGAVMGFLLAAN GLLVLYITINLFKLYYGDDWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA EASCAALVVASISSFGINHEQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGI AVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHKIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRASISTVDVLTPKVFIGLIVG AMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQVAIS ASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGILFKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008828 [exp]	0	1
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	2.6	0.8613
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	2.8	0.8374
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10037672 [exp]	3.5	0.8312
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10020411 [exp]	15.3	0.7718
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10013979 [exp]	18.6	0.8304
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031862 [exp]	21.2	0.7920
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10042940 [exp]	24.4	0.7993
AT5G35960			Protein kinase family protein ...		Lus10008192 [exp]	31.5	0.8247
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	34.6	0.7728
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10012280 [exp]	38.8	0.7997

Compare expression of checked genes

Lus10008828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.