Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19720 98 / 1e-21 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G02750 93 / 3e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 92 / 5e-20 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G55740 91 / 2e-19 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G28660 90 / 2e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 88 / 1e-18 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14050 87 / 2e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04780 87 / 3e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G28640 86 / 3e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 86 / 5e-18 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022368 [exp] 312 / 6e-97 AT2G13600 414 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022353 [exp] 218 / 3e-70 AT3G02330 98 / 2e-24 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000213 [exp] 225 / 3e-67 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007772 [exp] 189 / 2e-55 AT4G37170 281 / 6e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022359 [exp] 184 / 1e-52 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008362 [exp] 182 / 4e-52 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025554 [exp] 171 / 3e-48 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10027013 [exp] 157 / 2e-45 AT5G38280 195 / 3e-58 PR5-like receptor kinase (.1) Lus10008335 [exp] 165 / 6e-45 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018800 [exp] 194 / 6e-55 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G009400 [exp] 151 / 3e-40 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.007G125200 [exp] 145 / 1e-38 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 145 / 4e-38 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 144 / 8e-38 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 144 / 8e-38 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.017G009100 [exp] 142 / 4e-37 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.007G117050 [exp] 141 / 2e-36 AT5G38280 338 / 5e-106 PR5-like receptor kinase (.1) Potri.017G009500 [exp] 141 / 2e-36 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1) Potri.017G009600 [exp] 140 / 3e-36 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008830 pacid=23169163 polypeptide=Lus10008830 locus=Lus10008830.g ID=Lus10008830.BGIv1.0 annot-version=v1.0 ATGATTGCTGGCTATTGCGAGACTGGAGTCGTGTCCAAGGCAATGCAACCCTTCGATGAAATGGAGCTTGGTGGAATAGGGAGAAGTATAATTTCGTGCA ACTCCATGATTGCAGGAAGTGCCTTGACTGCTTGTGCTAATATGGCTTCCTTGAGTAAGGGTAAGGAGATTCATTTTATTGCCATTGCCAGAGGGTTGCA ATCTGAGGCATTCTTAGGAGCAGCTCTTGTGGAGATGTACTGTGCATGTAAGGATATAATCGCGGCTCAGTTGGCTTTTGATGAGGTTATTGATAAGGAT ATCGCCACCTGGAATGCTCTGATTTTTGGATACGCTAGCTTAAACGATACTGAGGAAGTACAAGTTTTGCTTCAGCAAATGAAGGAAGATGGTCAAGAGC CGAATTCGTACACATGGAATGGTATTCTCGAATGTCATTTACAAGATGGAAACCTAGATTTAGCGAGGCAGTTATTATATGAAATGCACGACTCGGAGTT CATCCCAGATGTTTATACGGTTGGAATGCTTCTAGCTGTGAAATCCTATGGTCAGTTCTGCAATGTTTATGGAAACGGCTCCTTGCACTATTATGCGGTT ATTGATGGTGATCGTGGTGGTGGCGTGGATTTATTGATCTTGGGAAAGAAGTGCAAAGTGGAGATGATTACTTTGTTACCAGCGGTGACTATTGTTCACC TGGCAATAACATTTTGTGGAACCTCGGTCGTAATTGCATTCCTAATATATAAATGGCGAAGAAGACATCTATCAGCATATGATAAAATAGAAGAATTCAT TCAGAATCACAACCTCATGCCAATCGGGTACTCTTACTCAAACATCAAGAAGTTCACAGGCAGCTTCAAGGACAAGGTAGGAGAAGGCGGTTTTTGTTCT GTTTACAAGGCCAAACTCCAGAATGACAGTTTCGCAGCTTTAAAGATGCTTGGAAAGTCCACAGCTGGCGGAGTCCAAGACTTTATCAACGAAGTTGCTA CCATTGGAACGATTCACCATGCTAATGTGACGAATCCTGAAAGTCGTCCTCCAATAAACAAAGTGGCAGAGATGTTTGAAGGAGAGCTTGAAAGCTTACC ACGGTCTCATAGACTTGTGTTTTATGCTGGAGAATCTGTGAGAAACATCAAAGAAGGATCGTCGTCGTCTTTCATGTCATCGCGGTAG
AA sequence Show only first row Show all	>Lus10008830 pacid=23169163 polypeptide=Lus10008830 locus=Lus10008830.g ID=Lus10008830.BGIv1.0 annot-version=v1.0 MIAGYCETGVVSKAMQPFDEMELGGIGRSIISCNSMIAGSALTACANMASLSKGKEIHFIAIARGLQSEAFLGAALVEMYCACKDIIAAQLAFDEVIDKD IATWNALIFGYASLNDTEEVQVLLQQMKEDGQEPNSYTWNGILECHLQDGNLDLARQLLYEMHDSEFIPDVYTVGMLLAVKSYGQFCNVYGNGSLHYYAV IDGDRGGGVDLLILGKKCKVEMITLLPAVTIVHLAITFCGTSVVIAFLIYKWRRRHLSAYDKIEEFIQNHNLMPIGYSYSNIKKFTGSFKDKVGEGGFCS VYKAKLQNDSFAALKMLGKSTAGGVQDFINEVATIGTIHHANVTNPESRPPINKVAEMFEGELESLPRSHRLVFYAGESVRNIKEGSSSSFMSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10008830 [exp]	0	1
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031837 [exp]	7.0	0.8467
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000564 [exp]	9.3	0.8171
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10016390 [exp]	9.5	0.8132
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10014707 [exp]	11.7	0.8345
AT2G40760			Rhodanese/Cell cycle control p...		Lus10034243 [exp]	18.8	0.8134
AT5G06810			Mitochondrial transcription te...		Lus10039774 [exp]	20.6	0.7388
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10042016 [exp]	25.5	0.8039
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10023283 [exp]	28.4	0.8138
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	35.2	0.7942
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10011563 [exp]	36.2	0.7800

Compare expression of checked genes

Lus10008830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.