Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49350 353 / 1e-116 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 337 / 3e-110 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G41940 319 / 2e-103 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G24390 312 / 4e-101 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G52580 76 / 3e-14 RabGAP/TBC domain-containing protein (.1.2) AT2G43490 75 / 5e-14 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT3G59570 72 / 4e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 69 / 2e-12 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G54780 69 / 3e-12 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G28550 67 / 1e-11 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022356 [exp] 659 / 0 AT3G49350 650 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023237 [exp] 390 / 3e-131 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 383 / 2e-128 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10033232 [exp] 347 / 3e-114 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10004802 [exp] 77 / 1e-14 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10011159 [exp] 71 / 6e-13 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10038091 [exp] 71 / 1e-12 AT5G52580 938 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10043064 [exp] 71 / 1e-12 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10027697 [exp] 68 / 2e-12 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G024500 [exp] 467 / 4e-161 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.015G007400 [exp] 444 / 6e-152 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G084300 [exp] 369 / 1e-122 AT5G41940 603 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.003G146300 [exp] 360 / 1e-118 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G132900 [exp] 76 / 1e-14 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.017G023200 [exp] 75 / 5e-14 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.018G127500 [exp] 74 / 9e-14 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.006G066300 [exp] 73 / 2e-13 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.001G419100 [exp] 72 / 3e-13 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.011G135300 [exp] 70 / 1e-12 AT4G27100 667 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [flax] [poplar] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Lus10008839 pacid=23169167 polypeptide=Lus10008839 locus=Lus10008839.g ID=Lus10008839.BGIv1.0 annot-version=v1.0 ATGAAAGCTCTGAGGCGAAGTCATACTTCGTCAGCATCTTCAAATACTCCTTCTCCGTCGTCGTCTGGTTCAGGAACGTCGTCCTCTGCGTCTTCGTCGT CGTCATCCTGGGTTCATTTACGTTCCGTACTCTTCGTTGTGAACTCCTCCTCACCAGCTCATTCTTGCCATTCTGATCGTGGGCGTCTGAAATCGCCATG GTCCCGCAGGAAAAGAAAACATGTTCTTACCCCTCAACAGTGGTGTAGTTTATTTACAGCTGATGGGAAATTACGTGACGGCGGAGTCAAGTTTTTGAAG AAAGTTCGCAGCGGGGGTGTTGATCCAAGTATAAGACCAGAGGTTTGGCCATTTCTTCTTGGAGTCTATGAGTTGGACAGTACTAAAGCAGAAAGGGAGC TACTTAGAACCCAAAAAAGGAAAGAATATGAGAAACTTCGGAGACAATGCCGTCGACTCCTTAGGCGAAATAGTGGGAGCTTGAAAACGAGTGAAAATGG AGAAGCAATTGACAATGAGGATGATGGAGGTTCTACTCATGATATAGACTCTTCTAGTCATGAAGATGTAGTTAGTGCCAGAGAATCTCTTTCTAGTGAA GGAAAGAGTCCAGATATTGATCAATCAGATGATCTACGTGTTGCATTATTAGAAGGCGATGATCGTGGGGGCCAGACACAGAGTGCTGATGCATCTGCAC AAAATACCGAGTCATCCGACACAGAATCGTCTGAAGATTCTGTAGTCATTCAGGCCATTGCTGGCATTCAGGCCTTTGCGGGAGAAAACAGGGAGGATAA CGATGCTAATGTTTCTTCCAAAGAAGATACTTCTCCATCAGGGTCGGGTGATCTTTCAATGGACAAGGCTGTTGAAGATTTTGCTACATGGCAGCGTATT ATCCGTGTGGATGCTGTTCGTGCTAACTCAGAATGGATACCTTACTCCCCTTCTCAGGCTTCCATATCAGAAGCGAGAGCCCAGCGTTCTGCTGCGGCTG TTGGGTTAAAGGAGCACGAACATCTAGAGCCGTGCAGGATTTTCCATGCTGCACGGCTAGTTGCAATACTTGAAGCCTATGCGCTATACGACCCTGAAAT TGGATACTGTCAAGGAATGAGTGACCTCCTTAGCCCAATAATTGCAGTGATGCAAGAAGACCATGAAGCCTTTTGGTGTTTTGTGGGTTTCATGAAGAAG GCTCGACACAACTTTAGGCTTGATGAGGCGGCTTCAGTTTTGCAGAACAGGAAACTGATAATAGAGAAGTACAGCAGCATGGATGAGATTCTAAAGGAAT GCAATGGAATGTCTGGGCACCTTGATGTGTGGAAGCTCTTAGATGATGCGCATAATTTGGTGGTTAACTTGCATGAGAAGGTAGAGAGTCGTCCTTCTTC TGATAGCTAA
AA sequence Show only first row Show all	>Lus10008839 pacid=23169167 polypeptide=Lus10008839 locus=Lus10008839.g ID=Lus10008839.BGIv1.0 annot-version=v1.0 MKALRRSHTSSASSNTPSPSSSGSGTSSSASSSSSSWVHLRSVLFVVNSSSPAHSCHSDRGRLKSPWSRRKRKHVLTPQQWCSLFTADGKLRDGGVKFLK KVRSGGVDPSIRPEVWPFLLGVYELDSTKAERELLRTQKRKEYEKLRRQCRRLLRRNSGSLKTSENGEAIDNEDDGGSTHDIDSSSHEDVVSARESLSSE GKSPDIDQSDDLRVALLEGDDRGGQTQSADASAQNTESSDTESSEDSVVIQAIAGIQAFAGENREDNDANVSSKEDTSPSGSGDLSMDKAVEDFATWQRI IRVDAVRANSEWIPYSPSQASISEARAQRSAAAVGLKEHEHLEPCRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIIAVMQEDHEAFWCFVGFMKK ARHNFRLDEAASVLQNRKLIIEKYSSMDEILKECNGMSGHLDVWKLLDDAHNLVVNLHEKVESRPSSDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10008839 [exp]	0	1
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	1.7	0.8462
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10038759 [exp]	3.7	0.8443
AT5G43820			Pentatricopeptide repeat (PPR)...		Lus10010662 [exp]	6.2	0.7975
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10017085 [exp]	10.4	0.8305
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	12.6	0.8085
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	13.4	0.8210
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	13.9	0.8130
AT1G16560			Per1-like family protein (.1.2...		Lus10015006 [exp]	14.5	0.8133
AT4G15520			tRNA/rRNA methyltransferase (S...		Lus10034004 [exp]	15.0	0.7647
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	16.7	0.8223

Compare expression of checked genes

Lus10008839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.