Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57680 77 / 1e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032951 [exp] 144 / 6e-43 ND / Lus10008924 [exp] 107 / 5e-26 AT1G57680 369 / 3e-126 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G023500 [exp] 233 / 2e-74 AT1G57680 111 / 6e-28 unknown protein Potri.004G227000 [exp] 85 / 4e-18 AT1G57680 306 / 5e-102 unknown protein Potri.003G003500 [exp] 77 / 2e-15 AT1G57680 284 / 4e-93 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008842 pacid=23169165 polypeptide=Lus10008842 locus=Lus10008842.g ID=Lus10008842.BGIv1.0 annot-version=v1.0 ATGGTGAGAGACGCACCAACGGCCTCATCACCACCGCTCCTCGAAATCATCGTGGATCTAGTCACGCTCTGCTCCATCTTCGCCATCCTGATCCTCTCCT TGGTCTCCCTCCTATTCGTCTTCCACCTCTACCTCAAATCCAGAACCGCCGCCGGGTCTTCCTCCCGACACCTCCGGAGCTTCAACTCCCTTTGGAGCGT CCGATTCTGCCTCGTCCTCTTCATCACCCTCTGGGCTCTAACGGACCTCCTCCGCATCCCGTCCTTCCGCCGCCGATACACCCCCAACGGACTCCTCACC GTCTCCCAACAGATCACCATCTGCAAACTCCACGTCTCCCTCTCCCTCGGCCTCTTCGAGCCAGGATTCCTCGTCACTTTACTCTACCTCGTCAACATCT CCGTCAAGAAAACCGCCCCGCCCCGCCGCTCTTTCGCCGCCTTTATCTTCGTGTCCGTCGCCTGTCTGCCGCCTTTCCTCCTCCAGATCTTCATCGTCGC CTTCGGCGCCTCCCTCTTCCACCTCCCATCATTCTTCAACCGCAGTTTCCTGGAAAACAACAGCGTTAACGGTGAGGAATCGTCAGATCAGGAGGTGGTC TGCTTGTATCCGTTCATGAGCTGCATCGTGTTCGCTGGGTTCGTGGTTTGGTATCTGGCGGCGTTCTCGATATCGTGCTTCAAGGCGCTGACGCTGGTGG TTAATCAAGGGATGCGGATGAGGCTGTACGGATTGACGCTCGTCGTGATGGTGACGCTACCTTTACAGCTGGTGTCTCTCGGGTTTTCGGTGATGTGGAC CCCACGTGACGAGGCATACGCCGTGCTGTCCCTCGTGATCTTCCTTACTGCCCTCGTGATCGCGGCCGTTGGGGAAGGGATATTGGTGATTCGGCCCATT GCCGATTCGTTGGCGGTTGGATTGCAGGAGATCCAATTAGGGGGATCGAGGCAGCCAGAGCTTCCGGCGGCGGCGGAGGAGGAGGAGATAGCAACGGTGG CGGTAGTTGCGCCAACCGGTGGTAGTAGTGTACAGGTTTGA
AA sequence Show only first row Show all	>Lus10008842 pacid=23169165 polypeptide=Lus10008842 locus=Lus10008842.g ID=Lus10008842.BGIv1.0 annot-version=v1.0 MVRDAPTASSPPLLEIIVDLVTLCSIFAILILSLVSLLFVFHLYLKSRTAAGSSSRHLRSFNSLWSVRFCLVLFITLWALTDLLRIPSFRRRYTPNGLLT VSQQITICKLHVSLSLGLFEPGFLVTLLYLVNISVKKTAPPRRSFAAFIFVSVACLPPFLLQIFIVAFGASLFHLPSFFNRSFLENNSVNGEESSDQEVV CLYPFMSCIVFAGFVVWYLAAFSISCFKALTLVVNQGMRMRLYGLTLVVMVTLPLQLVSLGFSVMWTPRDEAYAVLSLVIFLTALVIAAVGEGILVIRPI ADSLAVGLQEIQLGGSRQPELPAAAEEEEIATVAVVAPTGGSSVQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57680			unknown protein		Lus10008842 [exp]	0	1
AT1G28280			VQ motif-containing protein (....		Lus10015315 [exp]	1.4	0.8258
AT1G59970			Matrixin family protein (.1)		Lus10030662 [exp]	3.2	0.8528
AT5G14890			NHL domain-containing protein ...		Lus10001942 [exp]	4.8	0.7715
AT3G16180			Major facilitator superfamily ...		Lus10014537 [exp]	5.5	0.8064
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10012501 [exp]	5.9	0.8217
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	7.9	0.8252
AT3G07870			F-box and associated interacti...		Lus10012355 [exp]	8.5	0.8066
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	9.4	0.8242
AT4G01575			serine protease inhibitor, Kaz...		Lus10007864 [exp]	12.2	0.7874
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10022671 [exp]	12.5	0.8180

Compare expression of checked genes

Lus10008842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.