Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53550 236 / 2e-73 ATYSL3, YSL3 YELLOW STRIPE like 3 (.1.2) AT5G24380 227 / 3e-70 ATYSL2, YSL2 YELLOW STRIPE like 2 (.1) AT4G24120 225 / 2e-69 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) AT3G27020 182 / 4e-53 YSL6 YELLOW STRIPE like 6 (.1) AT5G41000 175 / 9e-51 YSL4 YELLOW STRIPE like 4 (.1) AT1G65730 170 / 1e-48 YSL7 YELLOW STRIPE like 7 (.1) AT1G48370 135 / 3e-36 YSL8 YELLOW STRIPE like 8 (.1) AT3G17650 133 / 2e-35 YSL5, PDE321 pigment defective 321, YELLOW STRIPE like 5 (.1) AT5G45450 70 / 3e-14 Oligopeptide transporter OPT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032950 [exp] 328 / 2e-109 AT5G53550 912 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022360 [exp] 273 / 4e-87 AT5G53550 1044 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10022358 [exp] 270 / 8e-87 AT5G53550 939 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008836 [exp] 269 / 4e-86 AT5G53550 1000 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10023240 [exp] 248 / 8e-78 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10008869 [exp] 246 / 3e-77 AT5G53550 994 / 0.0 YELLOW STRIPE like 3 (.1.2) Lus10033231 [exp] 228 / 4e-70 AT4G24120 1011 / 0.0 YELLOW STRIPE like 1 (.1) Lus10000879 [exp] 226 / 1e-69 AT4G24120 1006 / 0.0 YELLOW STRIPE like 1 (.1) Lus10035194 [exp] 185 / 3e-54 AT3G27020 1147 / 0.0 YELLOW STRIPE like 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G055224 [exp] 248 / 4e-78 AT5G53550 1008 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G084400 [exp] 239 / 8e-75 AT4G24120 932 / 0.0 YELLOW STRIPE like 1 (.1) Potri.001G082400 [exp] 213 / 5e-65 AT4G24120 813 / 0.0 YELLOW STRIPE like 1 (.1) Potri.012G024700 [exp] 211 / 2e-64 AT5G53550 858 / 0.0 YELLOW STRIPE like 3 (.1.2) Potri.001G327300 [exp] 177 / 2e-51 AT3G27020 1088 / 0.0 YELLOW STRIPE like 6 (.1) Potri.017G151800 [exp] 170 / 1e-48 AT1G65730 935 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069200 [exp] 167 / 1e-47 AT1G65730 964 / 0.0 YELLOW STRIPE like 7 (.1) Potri.017G151600 [exp] 140 / 8e-38 AT3G17650 921 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1) Potri.017G150500 [exp] 139 / 9e-38 AT1G65730 936 / 0.0 YELLOW STRIPE like 7 (.1) Potri.004G069300 [exp] 139 / 2e-37 AT3G17650 897 / 0.0 pigment defective 321, YELLOW STRIPE like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [flax] [poplar] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Lus10008843 pacid=23169170 polypeptide=Lus10008843 locus=Lus10008843.g ID=Lus10008843.BGIv1.0 annot-version=v1.0 ATGTCCTCACGAATGAATTTATCTCTTCAGGTGTTCATTTCTTTCCCTCTAATACTTGGGGATGGCCTTTACAATTTTGTAAAGATACTATGTTGCACAG CTACCAGCATTCTTACAGGTGCAAGAGCAAGAAAAAATCTTCAAGCTGTTGCTGACATCCAGAGTGAGCCTCCTATGGACGATCTTCGAAAAAATGAGGT GTTCATGAGGGAGATGATTCCGATCTGGATAGCCTGTATAGCTTACATAGCCTTCTCGATTATTTCAATAATTGTGATCCCGCTCATGTTCCCTCGACTA AAATGGTACTACGTAGTAGTTGCATACATTCTTGCCCCGACTCTTAGCTTCTCCAATGCATATGGAGCCGGTTTGACAGACATGAACATGGCTTACAGCT ACGAAAAGGTGGCAGGCACTATTTGTGCTTGCAGCCCTATCGGGGAAAGAAAACAGCGTGGTGGTCGGACTTGTAGGTTGCGGCTTGATCAAGCATTTGA TGTTGGGAACCCGGATGGGGAGTACATGGCTCCTTACGCGCTCATCTATCGAAACATGGAGATTCTTGGAGTGCAAGGCTTCTCTGCATTACCACAACAC TGCCTGAAGCTCTGCTACGGGTTCTTTGCGTTTGCGATATTGGCCAACTTGTTGAGAGATTTGCTTCCTAAGAAGATAAGTGAGTGGATTCTGTTTCCAA TGGCGATGGCGGTACCGTTTTCGTCAGAGAGTACTTTGCGATAG
AA sequence Show only first row Show all	>Lus10008843 pacid=23169170 polypeptide=Lus10008843 locus=Lus10008843.g ID=Lus10008843.BGIv1.0 annot-version=v1.0 MSSRMNLSLQVFISFPLILGDGLYNFVKILCCTATSILTGARARKNLQAVADIQSEPPMDDLRKNEVFMREMIPIWIACIAYIAFSIISIIVIPLMFPRL KWYYVVVAYILAPTLSFSNAYGAGLTDMNMAYSYEKVAGTICACSPIGERKQRGGRTCRLRLDQAFDVGNPDGEYMAPYALIYRNMEILGVQGFSALPQH CLKLCYGFFAFAILANLLRDLLPKKISEWILFPMAMAVPFSSESTLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008843 [exp]	0	1
AT1G61105			Toll-Interleukin-Resistance (T...		Lus10011216 [exp]	1.4	0.9346
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10010879 [exp]	2.0	0.8006
AT2G25344		LCR14	low-molecular-weight cysteine-...		Lus10014355 [exp]	3.5	0.8078
AT2G03360			Glycosyltransferase family 61 ...		Lus10037124 [exp]	3.9	0.7528
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010873 [exp]	6.0	0.8652
					Lus10028608 [exp]	12.4	0.6536
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	14.5	0.7318
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	15.7	0.7318
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Lus10012991 [exp]	16.7	0.7318
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10013794 [exp]	17.3	0.6808

Compare expression of checked genes

Lus10008843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.