Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46690 94 / 2e-25 SAUR-like auxin-responsive protein family (.1) AT4G00880 93 / 3e-25 SAUR-like auxin-responsive protein family (.1) AT3G61900 82 / 7e-21 SAUR-like auxin-responsive protein family (.1) AT5G53590 72 / 1e-16 SAUR-like auxin-responsive protein family (.1) AT4G34800 68 / 8e-16 SAUR-like auxin-responsive protein family (.1) AT4G34770 66 / 5e-15 SAUR-like auxin-responsive protein family (.1) AT2G21210 66 / 7e-15 SAUR-like auxin-responsive protein family (.1) AT4G34780 65 / 2e-14 SAUR-like auxin-responsive protein family (.1) AT4G38850 64 / 4e-14 SAUR-AC1, ATSAUR15, ATSR15AU, SAUR15, SAUR_AC1 SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-like auxin-responsive protein family (.1) AT3G03850 63 / 1e-13 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032949 [exp] 170 / 3e-55 AT4G00880 104 / 9e-30 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 87 / 8e-23 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10012181 [exp] 69 / 7e-16 AT4G34770 97 / 3e-27 SAUR-like auxin-responsive protein family (.1) Lus10007564 [exp] 68 / 2e-15 AT4G34770 97 / 3e-27 SAUR-like auxin-responsive protein family (.1) Lus10007560 [exp] 67 / 3e-15 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 66 / 1e-14 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10009620 [exp] 65 / 2e-14 AT4G38840 112 / 5e-34 SAUR-like auxin-responsive protein family (.1) Lus10007561 [exp] 64 / 1e-13 AT4G34810 125 / 1e-38 SAUR-like auxin-responsive protein family (.1) Lus10025909 [exp] 63 / 1e-13 AT4G34770 116 / 3e-35 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G023400 [exp] 100 / 5e-28 AT2G46690 125 / 4e-38 SAUR-like auxin-responsive protein family (.1) Potri.015G006800 [exp] 96 / 3e-26 AT2G46690 128 / 2e-39 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 89 / 7e-24 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 86 / 3e-22 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 71 / 2e-16 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.009G126900 [exp] 62 / 1e-13 AT4G38840 131 / 1e-41 SAUR-like auxin-responsive protein family (.1) Potri.009G126700 [exp] 62 / 2e-13 AT4G38840 126 / 3e-39 SAUR-like auxin-responsive protein family (.1) Potri.014G066900 [exp] 63 / 4e-13 AT3G60690 191 / 9e-63 SAUR-like auxin-responsive protein family (.1) Potri.004G166100 [exp] 62 / 4e-13 AT2G21210 119 / 2e-36 SAUR-like auxin-responsive protein family (.1) Potri.009G126400 [exp] 61 / 8e-13 AT5G18020 119 / 1e-36 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10008845 pacid=23169172 polypeptide=Lus10008845 locus=Lus10008845.g ID=Lus10008845.BGIv1.0 annot-version=v1.0 ATGGGAAGTAATAGCAACGGATCTGAGATCGATCATCATCAACATCGCCATAACAGCGCCATGATTACTGCTGCCGCTGATACGGACGGCGGCGGAAAAC AGAGTCAGCACTTTCACTTCCACATCCATTTCCCGCATCTGGATCTGTTCCACCACCACAACAACAACGGGCCGAAGAAAGGGAGGGTGGCGATAATAGT TGGGGAAGAAGGAGAGGAGCAGCAGAGGTTCGTGATTCCGGTGATTTACATAAACCACCCGCTGTTCCACCGCCTTCTAAAAGTTGCGGAGGATGAATTC GATTTCCAGTACAAGGAAGGTCCCATCACAATCCCTTGCCACGTGGAGGAATTCCGCAACATCCAGGGGTTGATCGACCAGGATCAGAACAATCATCACC ACCACCATCTCCTATGCTTCTGGGTTTGA
AA sequence Show only first row Show all	>Lus10008845 pacid=23169172 polypeptide=Lus10008845 locus=Lus10008845.g ID=Lus10008845.BGIv1.0 annot-version=v1.0 MGSNSNGSEIDHHQHRHNSAMITAAADTDGGGKQSQHFHFHIHFPHLDLFHHHNNNGPKKGRVAIIVGEEGEEQQRFVIPVIYINHPLFHRLLKVAEDEF DFQYKEGPITIPCHVEEFRNIQGLIDQDQNNHHHHHLLCFWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46690			SAUR-like auxin-responsive pro...		Lus10008845 [exp]	0	1
AT3G19240			Vacuolar import/degradation, V...		Lus10019860 [exp]	3.0	0.8081
AT3G21870		CYCP2;1	cyclin p2;1 (.1)		Lus10027148 [exp]	3.7	0.8480
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10014978 [exp]	4.5	0.8213
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	4.9	0.8185
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	5.1	0.8351
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	5.3	0.8179
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	6.3	0.8197
AT2G28680			RmlC-like cupins superfamily p...		Lus10005880 [exp]	7.1	0.8066
AT1G56220			Dormancy/auxin associated fami...		Lus10015193 [exp]	7.2	0.8007
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Lus10023190 [exp]	9.2	0.7975

Compare expression of checked genes

Lus10008845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.