Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53620 549 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032948 [exp] 1417 / 0 AT5G53620 599 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G023200 [exp] 970 / 0 AT5G53620 583 / 0.0 unknown protein Potri.015G006700 [exp] 950 / 0 AT5G53620 528 / 6e-178 unknown protein Potri.016G069900 [exp] 111 / 5e-29 AT5G53620 114 / 5e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008846 pacid=23169179 polypeptide=Lus10008846 locus=Lus10008846.g ID=Lus10008846.BGIv1.0 annot-version=v1.0 ATGGAGGCCACGGCTGGTGTCGCCGCCTCCCGCGGTGGTCCTCTGCCGATGACTTCGTCCTCGAGGAAGGAGTGGCGTGCCGTTGCTGACCACCATTCTC TTCGAAATCCTAGTGACGGGGAGTTGGAACGTTCCAAGTTAGGGCAGACAGATGAGAGGACAATCTATGAGGTGCAGCATGGGAGCGAGCCTGTTGATGT TGATTTCTGTTCTATTACCGTTGATGGGAGTTTGGGAAATGACATTTTGGGTCAGCGGGTTCATGCTGTTGCCAGGCAAAGAGAAGAGCTGCAACAAATG GAAATTGAGCTGAAAGCTCAGATGATTGCTAGGTCCGAGATCATGGAGATGCAAAATAGCTTTGATTCCCAAATCAAAGAACATGAGGAATCTACTTTGA AGCTTCAGGAAAAACTCCATGAGAGGGAGCAGACAATACATGATCTAGAAAGAAGAATTGAAGAGAAGGCCAGGGAGTTGCATGCTGTGAAATTGGACAG CGAGGCGGCATGGGCCAAAGAGGACCTTCTCAGAGAGCAAAATAAAGAACTTGCTACCTTCAGAAGGGAGCGTGATCACTCTGAAGCTGAAAGAACACAA CACATACAGCAAATACATGAACTTCAAGAACATGTCCAAGAGAAAGAGAGACAAATTCTTGAGTTGCAAGATCAGCATAGGGTTGATCAGGAGACCATTT ACCTGAAGGACGAACAATTGAAAGTGTGGATAGCACGTGTCCAGGAGATGGATGTTATGCAATCTAGTTTACAATCTGAGCTACGTGAACGGATTGACCA ATATAATCAGCTATGGGTTGGCTGTCAAAGACAGCTGGGAGAGATGGAGAGACTTCATGTACATACCATACAACAGCTTCAGCTGGAGCTGACTGATGCA AGAGATAGGACTGGATCCTACTCTGACGAATCACGTCTTTCTCAAAAAAACTCAAATGATGCAACGAAGTTTGGTCAGAATGCTGGAAACCAAATAGATG TGAATAGAAGTGGTGCATCAGGTGCTGATAACGGTGTACATTCAAATGGGAATGCTGATAGTGTCACATCATATGCTTCATCTGGAAATGCAGCAAGTCA GGCCAACCATATTGCCAGCTTGCCAATATCTCCATCCTCTTTACTGGGAATGCCTACCTATCTCCCACCAGGTCAAATGACGGCACTGCATCCATTCATT CTGCATCAACAGGGAATTCCTCATTCTATGCCATCTCATGTTCACCAGCCTCAAGTTGGGCATTTCCATTCTGTTCAAGCAATGTCTTCTGTCCCTCAGT GGCAGAGTCAGCAGGCTGTGTCCGAGGTGTCACAGGCATCAACTCAGAATCCACTTGAACCATCTCACAGTGAGCAGAATCTTGATAGACCAGAAGCAAA GTACTATGACATGTCTGTTAATGGGCAGGGGTTTCGATCACCTTATCTAGATGTTCACATAAACCAAGGGGTGCAACCTGATTCTGCAATCCCACCATCT AGTGTCAACCAACAGGTTGTTGAATCAATTGATAGAAGTTACTTGGCTGGGAATCAGCCGGATCAAAACTTGCAACATATTTCTGCACAATTTAGTGAGG CCTTGCGATTAAACCCTCTTGAGCAGAAAAGTGTACCACAGGAGCAGAATGTTAACTTGGCTAATGATGGGCTAGACAGACAAATCTTGCCTGAAGAACA ACCGAGTTCTGCTGGCAGTGGTTCACTCTCTGAACCACCAGTTCACCACTCGGTTACCCTCGGTGAAACAGTCATCAACAATGGCACTGGAAAAACTCTT CCTGAAGCTTTAATGCCAACTGGGCAGACAAATATCACGCCAGCTGTAAAGATACCGGAGCCTGCACTTATTGATGAAAGATCCCTTTTGGCTTGCATAG TTCGGACAATTCCAGCCGGGGGTAGAATTCGCATAAATTCAACGCTTCCTAACAGGTTAGGGAAGATGATAGCACCATTACACTGGCATGACTACAAGAG AAAGTATGGGAAACTAGATGACTTTGTTGCCGGCCACCCTGAGTTGTTCTTGGTTGAAGGAGAGTTTATTCAACTAAGAGAAGGTGCACAGGAGATGATA GCTGCTACTGCAGCTGTTGCAAAAGTGGCTGCTGCTGCCGCTGCTTCAACACCTTACTCATCATTCTTGCCCGCCATGTCTGTCACTCCAATGGCGCAGT CTCACCGAATGAAGAAATTTCCTTCTACCGACTCCAACCGCGTAAATGGTGTAAGTTTTGGTGGGCCTGGGGGAATGTCAAATGTGAAAATATTGAGCAA ATCCAAGGATTCTCAGGAAATGAATGGAGCTGATACAGAAAGAAGCAGTGCGAGTAGTGGGCAGAACAAAAGCGCAAGTCAGGGAAGACCTTATTCAGGT TTCGTTGGGAAGCAACAAGGAAGCTTTCAATTTGGTCAGTATATTCATTCAGTGATGTTTGGCTGCACTGGTTATTGCTCTTGTGTCCGAAACTTTAGTC TCAGCTCCCTGGGAATGGTTGTTTTTCCTCCGAACGTGAAAAACGAAAGGGAGGGAGATTGA
AA sequence Show only first row Show all	>Lus10008846 pacid=23169179 polypeptide=Lus10008846 locus=Lus10008846.g ID=Lus10008846.BGIv1.0 annot-version=v1.0 MEATAGVAASRGGPLPMTSSSRKEWRAVADHHSLRNPSDGELERSKLGQTDERTIYEVQHGSEPVDVDFCSITVDGSLGNDILGQRVHAVARQREELQQM EIELKAQMIARSEIMEMQNSFDSQIKEHEESTLKLQEKLHEREQTIHDLERRIEEKARELHAVKLDSEAAWAKEDLLREQNKELATFRRERDHSEAERTQ HIQQIHELQEHVQEKERQILELQDQHRVDQETIYLKDEQLKVWIARVQEMDVMQSSLQSELRERIDQYNQLWVGCQRQLGEMERLHVHTIQQLQLELTDA RDRTGSYSDESRLSQKNSNDATKFGQNAGNQIDVNRSGASGADNGVHSNGNADSVTSYASSGNAASQANHIASLPISPSSLLGMPTYLPPGQMTALHPFI LHQQGIPHSMPSHVHQPQVGHFHSVQAMSSVPQWQSQQAVSEVSQASTQNPLEPSHSEQNLDRPEAKYYDMSVNGQGFRSPYLDVHINQGVQPDSAIPPS SVNQQVVESIDRSYLAGNQPDQNLQHISAQFSEALRLNPLEQKSVPQEQNVNLANDGLDRQILPEEQPSSAGSGSLSEPPVHHSVTLGETVINNGTGKTL PEALMPTGQTNITPAVKIPEPALIDERSLLACIVRTIPAGGRIRINSTLPNRLGKMIAPLHWHDYKRKYGKLDDFVAGHPELFLVEGEFIQLREGAQEMI AATAAVAKVAAAAAASTPYSSFLPAMSVTPMAQSHRMKKFPSTDSNRVNGVSFGGPGGMSNVKILSKSKDSQEMNGADTERSSASSGQNKSASQGRPYSG FVGKQQGSFQFGQYIHSVMFGCTGYCSCVRNFSLSSLGMVVFPPNVKNEREGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53620			unknown protein		Lus10008846 [exp]	0	1
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	1.0	0.9564
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Lus10042726 [exp]	2.0	0.9296
AT4G16180			unknown protein		Lus10017062 [exp]	2.8	0.9341
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10005061 [exp]	3.7	0.9234
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	4.0	0.9191
AT1G79150			binding (.1)		Lus10034234 [exp]	4.5	0.9275
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	6.9	0.9341
AT1G29370			Kinase-related protein of unkn...		Lus10015262 [exp]	10.0	0.9138
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	13.3	0.9098
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	13.7	0.9039

Compare expression of checked genes

Lus10008846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.