Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53650 83 / 5e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032946 [exp] 116 / 4e-36 AT5G53650 110 / 6e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022900 [exp] 83 / 6e-23 AT5G53650 82 / 2e-22 unknown protein Potri.015G006500 [exp] 82 / 2e-22 AT5G53650 78 / 7e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008848 pacid=23169157 polypeptide=Lus10008848 locus=Lus10008848.g ID=Lus10008848.BGIv1.0 annot-version=v1.0 ATGGGTTATGTGTTGAGGGTGAGATTGGCGTCGTTCTTCGCCGGAGCGGCAACGGCTTCTTTCGTCGGACTGTACAGCCTGTACAAGGATTACAAAGTTG CTCATGAATCCATCTCTCAACAGGTGAAGGGACTTTACGAGACACTCGATGCCCGGATTTCTGCTCTGGAGAATTTGAAACAAACTGAAGTTTCTCAAGC GGCAGATGCGACAGAGTAG
AA sequence Show only first row Show all	>Lus10008848 pacid=23169157 polypeptide=Lus10008848 locus=Lus10008848.g ID=Lus10008848.BGIv1.0 annot-version=v1.0 MGYVLRVRLASFFAGAATASFVGLYSLYKDYKVAHESISQQVKGLYETLDARISALENLKQTEVSQAADATE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53650			unknown protein		Lus10008848 [exp]	0	1
AT1G05205			unknown protein		Lus10039669 [exp]	1.4	0.9250
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10011491 [exp]	2.4	0.8915
AT4G20150			unknown protein		Lus10036250 [exp]	2.4	0.9069
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10004236 [exp]	5.9	0.8897
AT5G18800			Cox19-like CHCH family protein...		Lus10033991 [exp]	6.0	0.9066
AT3G07910			unknown protein		Lus10039527 [exp]	6.0	0.8768
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10015479 [exp]	6.2	0.8532
AT3G05070			unknown protein		Lus10026367 [exp]	6.9	0.8882
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	8.4	0.8940
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10015000 [exp]	9.2	0.8981

Compare expression of checked genes

Lus10008848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.