Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17750 581 / 0 AtPEPR2 PEP1 receptor 2 (.1) AT5G63930 569 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 548 / 2e-176 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 551 / 5e-176 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 550 / 2e-175 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G73080 533 / 2e-170 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT2G33170 518 / 8e-165 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 477 / 3e-149 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 474 / 3e-148 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G35710 474 / 3e-148 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039030 [exp] 567 / 0 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10036251 [exp] 521 / 1e-164 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038392 [exp] 501 / 3e-157 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10003612 [exp] 471 / 7e-147 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10028612 [exp] 466 / 2e-145 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10011756 [exp] 465 / 1e-144 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10000509 [exp] 460 / 2e-143 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019036 [exp] 453 / 4e-141 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10013968 [exp] 451 / 1e-140 AT1G28440 1372 / 0.0 HAESA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G022800 [exp] 1086 / 0 AT1G73080 582 / 0.0 PEP1 receptor 1 (.1) Potri.008G009300 [exp] 585 / 0 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.008G007600 [exp] 565 / 0 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.001G075000 [exp] 537 / 8e-171 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G156200 [exp] 534 / 2e-169 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.019G025500 [exp] 518 / 9e-165 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G051300 [exp] 516 / 3e-164 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G053400 [exp] 509 / 8e-162 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G174900 [exp] 509 / 2e-161 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 504 / 1e-159 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008849 pacid=23169161 polypeptide=Lus10008849 locus=Lus10008849.g ID=Lus10008849.BGIv1.0 annot-version=v1.0 ATGTACATAACAATTCATCTTCCAGTCAAATCTGCAATGCTCAGTTCACTCTTCCCACACTCATTCCTTCTCCTTCATCTCTTCATCACCATTACTACTG CAGCTACATCATCCCCTGCTGCAACTTCCCTCCTTCATTTCCGCAACAGTCTCCCACTCCACTCGCAGCACCTCCTTCAATGGACCCACTCAAATTCTTC ATCATCGTCATCATCTCCTTGCCAATGGACCGGAGTCACTTGCTACAATCCAGCCTCCGCAACTCCACTCATCAAGTCCCTCAATCTCACCGGGCTAACC CTCTCCGGCAACCTAACCAACTCTTTCCCCTTCCTCTGTCTCCACAGATCGCTTATCTCTCTCGACCTAGGCGCCAACAACTTCACCGGATTCCTTCCCC TCCAGCTGGCAACTTGCGGCCAGCTCGCCGTAGTCATTCTCGGCTATAACGGACTAGACGGTCCCATCCCGCCGCAGATTTTCCAGTCGAAGTTTCTTCA ACAGTTGGATCTCAGCTACAATTTCTTATCAGGTAAAATTCCTCAAGAGGTAGGGTTATGTACTAGTCTTCAATACCTTGGATTAGAGAGTAATTCCTTG GAAGGAGAGCTTCCTGCTGAGCTCTTCAGTCTCCCAAATCTGGATACTCTCTATTTGGACTCCAACAACTTCACTGGTTCGCTCCCTGATTTCCCTGATT CTTGCTCTTTGTCCATATTTTGGGTGTCTGGAAATGGCTTGTCTGGGGAACTTCCTGCTTCGCTTGGAAATTGCCGGAATCTTACTGTTTTTGTAGCTTC TGATAACGGTTTAGTCGGTGAGATTGAATCGGAGATGTTCATGGATCTTTCACTGCTTAGAAAGCTTTCTCTTGATGTGAATAGACTAGAGGGAGAAATC CCTGAGACTTTGTGGGGTTTGAAAAGTTTGGAGTGGGTTGACTTGTCGACTAACAGGTTGACTGGTGCTCTGTCTGAGAAGATCGGTCAATCTCAACGAC TGACGACTCTTGCTCTTTCTGATAATCAGTTAGTTGGCTCAATCCCTCCATCGATTGGAAATCTCAAAGATCTGAGTTACTTGTTTCTCTCCATCAACAG AATCAGTGGCTCCTTGCCTTCTCAGCTTGGTAACTGCAGCTCACTTATTGATCTCAGGCTGGATACCAACTTCATTGAAGGAGAAATTCCCTCTGAGATT TCCTTTCTTGAAAATCTTGAGAAACTTTATCTGTTCACCAATGGAATTACTGGTGAAGTACCTTGGAAGCTCGGGAGATTGAAATGGCTAAAGGAGTTGG CTCTCTATGAGAACAAACTGAGTGGTGAAATCCCGTCTGAGCTTACCGGTTTGAAAGAGCTCGAGTTTCTATCTCTGGCTCATAACAACCTTACTGGAGA GATACCACCTCAGCTTGGTGAAAGTTCTCCATTGTTTAAGGTGGATCTGATTGGTAACTCCCTTTCTGGTCTGGTTCCGTCGAGTTTATGTGCAGGAGGC AAGCTTACATTCCTGGTCCTTGGTAACAACCAGTTTAATGGGAGCTTTCCAGTTTGGGTTGGTGCATGTTCATCTCTTGATAGATTAATTCTGAGCAATA ATCTACTGCAAGGTGGGATACCGGAGGATATTGGAACTAACACCAGGATAACTTACCTGGAAGTTAAGAACAATTTGCTTGAAGGGAGCATACCACTTGG TTTTGGTCATTGGACCAATCTTTCAATGGTTGATTTTTCAGGGAACAGACTCTCTGGCTCCATTCCTCCTGAATTGGGATGGCTTGCGAATCTCCAGGAG CTGCATCTGGGTTCTAATTTGCTGACAGGGAGTATTCCTCAGGAGCTAAGCAATTGTACCAAGTTGATGGAATTAGGTCTAAGTGGGAATTCCATCTCAG GAGGAATTCCTGCAGGCATCATATCACTGGAAAGATTGGCAGTTGTTTTGCTTCAGGAGAACAAGCTCACTGGAGCAATCCCTGACTCTTTCTCGGCCCA CCAAAATCTCCGCGAACTTCAGCTCGCCAGCAACATGCTTGAAGGTCCTATTCCTTGTAGTCTGAGCAAACTCAAAAGTTTTAGTTCAGTTCTCAATGTA AGCGATAACAAGCTCTCCGGTCAGATCCCAACATGCCTAGGGAATCTGGACATGTTAGAGATTCTTGATCTCTCAAGAAACCTTTTTTCCGGTGAGATCC CTAGTCAATTGAACAATATGAAAACCCTAGACTTCTTCAACGTATCATTCAATGACCTCTACGGAAAAATCCCGGTTTCTTGGGAAAGAATAGCAGCTAA ACATCCAGGATCTTACATTGGAAACCCTGGCCTGTGTGACAATGATAGCAGATGCGGTACCAGAGGTAGGCATATGAGCAAACGAGAAGTGGCTATTATT GTTACCATTGTGATCATCACTGTGGCACTAATTTGTGTAATCGTTGTCACGTTCACTGCGAAAATGATTCGCCAGAAACACGAGTGTGATCAATCACTTC TCCGTGAAGAAGGGTCAAGATCCCAAAGCTTACCAAGTGATTTGAAGTTTGAAGACATAATACGGGCCACAGAGAGTTGCGATGAGGTGTATATGATAGG AAGAGGCCGACACGGGAAAGTATACTGGACAGAATCTGCACACTCAAAAAAGAAGTGGGCTGTGAAGAAGGTGAATCTTTCCGAATCGGACTTCAGCCAC GAGATGAGAATTCTGAACATGGTCAAGCATAGAAATGCAGTGAAAATGGGAGGCTACTGCATTGCCAAGGGACATTGCTTCATCGTCACCGAGTACATGC CCGGAGGGACATTGTTTGACGTGTTGCACAAAGTGCAATCCTACTCGGTTTTGAATTGGGAGGATAGATTCCGCATTGCACTTGGAATTGCTGAGTGTCT CTCGTACCTTCACCACGACTGTGTTCCTCAAATTATTCACAGGGATGTGAAATCAGACAATGTGCTTTTGGATTCAGAATTCGAACCCAAAGTTGCAGAC TTTGGAATGGCGAAGTTAGCTGATGATCATAATCTTGAAGGTGACGATGAGTCCAACGCAACCGTGTCTAAGATTGTTGGCACACTTGGGTACATGGCTC CAGAAAATGCATATTCAACGCGGCTAACGGAGAAGATTGATGTGTACAGCTATGGGGTGATTTTGCTGGAGCTGGTGAGCAGGAAACTGCCAGTCGATCC CAGCTTTGAGGAAGGGGAGGACATTGTTTGTTGGGTTAAGAAGAATGTGGAAGCTCATCATGATGGTGTCAAGGACATCATTAAGTTAGTCGATGATGAA ATCGGGTTGTGGGTTGCTGATAAGCAAATGAAGGCTATGAAGGTGCTGGAATTAGGGCTTGAGTGCACCCAACTGCTCCCTGAAACGAGACCCTCCATGA GAGATGTTGTGGCTTTCCTTCTCAAGTTAAGAGACAGAGACTTCAAGTTTTAA
AA sequence Show only first row Show all	>Lus10008849 pacid=23169161 polypeptide=Lus10008849 locus=Lus10008849.g ID=Lus10008849.BGIv1.0 annot-version=v1.0 MYITIHLPVKSAMLSSLFPHSFLLLHLFITITTAATSSPAATSLLHFRNSLPLHSQHLLQWTHSNSSSSSSSPCQWTGVTCYNPASATPLIKSLNLTGLT LSGNLTNSFPFLCLHRSLISLDLGANNFTGFLPLQLATCGQLAVVILGYNGLDGPIPPQIFQSKFLQQLDLSYNFLSGKIPQEVGLCTSLQYLGLESNSL EGELPAELFSLPNLDTLYLDSNNFTGSLPDFPDSCSLSIFWVSGNGLSGELPASLGNCRNLTVFVASDNGLVGEIESEMFMDLSLLRKLSLDVNRLEGEI PETLWGLKSLEWVDLSTNRLTGALSEKIGQSQRLTTLALSDNQLVGSIPPSIGNLKDLSYLFLSINRISGSLPSQLGNCSSLIDLRLDTNFIEGEIPSEI SFLENLEKLYLFTNGITGEVPWKLGRLKWLKELALYENKLSGEIPSELTGLKELEFLSLAHNNLTGEIPPQLGESSPLFKVDLIGNSLSGLVPSSLCAGG KLTFLVLGNNQFNGSFPVWVGACSSLDRLILSNNLLQGGIPEDIGTNTRITYLEVKNNLLEGSIPLGFGHWTNLSMVDFSGNRLSGSIPPELGWLANLQE LHLGSNLLTGSIPQELSNCTKLMELGLSGNSISGGIPAGIISLERLAVVLLQENKLTGAIPDSFSAHQNLRELQLASNMLEGPIPCSLSKLKSFSSVLNV SDNKLSGQIPTCLGNLDMLEILDLSRNLFSGEIPSQLNNMKTLDFFNVSFNDLYGKIPVSWERIAAKHPGSYIGNPGLCDNDSRCGTRGRHMSKREVAII VTIVIITVALICVIVVTFTAKMIRQKHECDQSLLREEGSRSQSLPSDLKFEDIIRATESCDEVYMIGRGRHGKVYWTESAHSKKKWAVKKVNLSESDFSH EMRILNMVKHRNAVKMGGYCIAKGHCFIVTEYMPGGTLFDVLHKVQSYSVLNWEDRFRIALGIAECLSYLHHDCVPQIIHRDVKSDNVLLDSEFEPKVAD FGMAKLADDHNLEGDDESNATVSKIVGTLGYMAPENAYSTRLTEKIDVYSYGVILLELVSRKLPVDPSFEEGEDIVCWVKKNVEAHHDGVKDIIKLVDDE IGLWVADKQMKAMKVLELGLECTQLLPETRPSMRDVVAFLLKLRDRDFKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Lus10008849 [exp]	0	1
AT4G32350			Regulator of Vps4 activity in ...		Lus10034905 [exp]	4.6	0.8467
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001428 [exp]	8.9	0.8475
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10017307 [exp]	10.8	0.8303
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10016817 [exp]	10.9	0.8473
AT2G38840			Guanylate-binding family prote...		Lus10003085 [exp]	20.0	0.8355
AT2G40070			unknown protein		Lus10011374 [exp]	21.8	0.8248
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	25.5	0.8237
AT1G14100		FUT8	fucosyltransferase 8 (.1)		Lus10041641 [exp]	25.7	0.8457
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024113 [exp]	28.3	0.8465
AT5G11700			unknown protein		Lus10005497 [exp]	31.0	0.8386

Compare expression of checked genes

Lus10008849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.