Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49390 401 / 1e-139 CID10 CTC-interacting domain 10 (.1.2) AT1G32790 391 / 2e-135 CID11 CTC-interacting domain 11 (.1.2) AT4G10610 388 / 9e-135 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT3G14450 341 / 2e-116 CID9 CTC-interacting domain 9 (.1) AT1G53650 338 / 1e-115 CID8 CTC-interacting domain 8 (.1.2) AT5G24440 307 / 3e-103 CID13 CTC-interacting domain 13 (.1) AT4G34110 61 / 9e-10 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G22760 60 / 1e-09 PAB3 poly(A) binding protein 3 (.1) AT2G16940 59 / 3e-09 Splicing factor, CC1-like (.1.2.3) AT1G49760 54 / 1e-07 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032942 [exp] 715 / 0 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10032941 [exp] 512 / 0 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10033242 [exp] 375 / 4e-129 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10008275 [exp] 377 / 9e-129 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10027886 [exp] 64 / 8e-11 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 64 / 9e-11 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 63 / 1e-10 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 62 / 3e-10 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10034466 [exp] 62 / 4e-10 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G005400 [exp] 489 / 5e-174 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.012G022000 [exp] 459 / 4e-162 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.011G152700 [exp] 365 / 3e-125 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.001G377500 [exp] 357 / 1e-122 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.011G095800 [exp] 356 / 2e-122 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.001G448800 [exp] 341 / 2e-116 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.004G177000 [exp] 64 / 7e-11 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.001G304000 [exp] 61 / 4e-10 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.010G209701 [exp] 61 / 4e-10 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.002G124200 [exp] 60 / 2e-09 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07145 [flax] [poplar] PAM2 Ataxin-2 C-terminal region CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10008851 pacid=23169168 polypeptide=Lus10008851 locus=Lus10008851.g ID=Lus10008851.BGIv1.0 annot-version=v1.0 ATGGCTATTGTTGCTGAAAATGGTGGGCCGAAAAATGGGGTCACCGGTCAGAATTTGGACACCACCACTGTATTGTCATCTGACTCCAACGGCGTTGAGA GCACAAAACCCATGGACGACGAATCCACCGCGATCGACGGCGGAAACACAATTTCTCAGCCCCAGAACGATGATCGGGCGGTGGATGATGGTAAGTGCGA CCAGCTGTCGGAGCTGGAGAATGGAGCTTCTGATTTGAGTACGGTCAAGAACGATGTGACCAAGTCTGATGATGGGTTTGGGGGTGCCAATCATCAGATG AATTTCTCTAAAGTTAATGGGGCGAATGATATGAGTGAGTTAGTGGATATGCTGTCCAAGTTGAATCCGATGGCTCAAGAGTTTGTACCACCTTCTCTTG CTAAAAATCATGGCTTTTGGGATAACGGATTTGGGTACGCTAACAATTTTGGAATGCTTAATCCCAACGGGAATGCAAATGGAAATATAAAAAGGAAGAA CAATTTTAACCAAGGAAGGAGAAGAACCAACAGTAGGAGGAGTATGGCTCAGCGCGAGGACGTAATTAGGAGGACAGTATATGTGTCTGACATTGATCAG CAGGTTACGGAGGAGCAGCTTGCCGGTCTATTTATTCATTGTGGACAAGTTGTTGATTGTCGTATATGCGGTGATCCTAATTCAGTCCTTCGATTCGCTT TCATTGAATTTACTGATGAAGAAGGTGCAAGGGTTGCTTTAAATTTGTCGGGGACTGTGCTTGGATATTACCCACTAAGAGTGCTGCCTTCCAAAACTGC CATTGCACCTGTTAACCCTACATTTTTGCCAAGGTCTGAAGATGAACGTGAGATGTGTGCTAGGACTATTTACTGCACAAATATAGACAAGAAGATTTCT CAAGCAGATGTTAGACTGTTCTTTGAATCGTTTTGTGGAGAGGTTCAATGTTTGAGGCTCCTTGGTGATTATCATCATTCAACTCGTATTGCTTTCGTTG AGTTTGCAATGGCTGAGAGTGCAATTGCTGCTCTCAACTGTAGCGGAGCTGTTCTGGGATCCTTGCCTATAAGGGTAAGCCCGTCGAAGACACCAGTTCG CCCACGTGTTCCTCGACCATCTTCGATGCGCTAA
AA sequence Show only first row Show all	>Lus10008851 pacid=23169168 polypeptide=Lus10008851 locus=Lus10008851.g ID=Lus10008851.BGIv1.0 annot-version=v1.0 MAIVAENGGPKNGVTGQNLDTTTVLSSDSNGVESTKPMDDESTAIDGGNTISQPQNDDRAVDDGKCDQLSELENGASDLSTVKNDVTKSDDGFGGANHQM NFSKVNGANDMSELVDMLSKLNPMAQEFVPPSLAKNHGFWDNGFGYANNFGMLNPNGNANGNIKRKNNFNQGRRRTNSRRSMAQREDVIRRTVYVSDIDQ QVTEEQLAGLFIHCGQVVDCRICGDPNSVLRFAFIEFTDEEGARVALNLSGTVLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKIS QADVRLFFESFCGEVQCLRLLGDYHHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRVPRPSSMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10008851 [exp]	0	1
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	1.0	0.9536
AT5G11680			unknown protein		Lus10020200 [exp]	1.4	0.9520
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	4.2	0.9359
AT5G65495			unknown protein		Lus10012729 [exp]	6.7	0.9444
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10036185 [exp]	7.5	0.9104
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10018294 [exp]	13.6	0.9368
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10035728 [exp]	13.7	0.8881
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10014991 [exp]	14.5	0.8859
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	17.2	0.9292
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014942 [exp]	18.1	0.8910

Compare expression of checked genes

Lus10008851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.