Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20900 311 / 1e-100 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 286 / 1e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51280 261 / 9e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48850 249 / 9e-79 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04770 235 / 3e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 72 / 5e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023256 [exp] 935 / 0 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028434 [exp] 270 / 1e-84 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028433 [exp] 270 / 2e-84 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 270 / 2e-84 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041886 [exp] 270 / 4e-84 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011872 [exp] 245 / 3e-77 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022806 [exp] 244 / 1e-71 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10000753 [exp] 230 / 2e-71 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011738 [exp] 229 / 1e-70 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G465401 [exp] 400 / 8e-132 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 384 / 4e-126 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G056500 [exp] 277 / 6e-87 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G112100 [exp] 270 / 3e-84 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G177600 [exp] 256 / 3e-81 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G240700 [exp] 251 / 2e-79 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 240 / 2e-75 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 68 / 7e-14 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10008852 pacid=23144251 polypeptide=Lus10008852 locus=Lus10008852.g ID=Lus10008852.BGIv1.0 annot-version=v1.0 ATGCGGTTCAAAAAAGACGACGACGGTGACTACAACAACGGCGGCGAGAAACGAGCGGTGGTGAATTGCGTAGGGAAAGTTCAAGTTCGGGGGTTCTTGA CCCCTCCGCCGACTTGGACGCCGTCGCATTCTCGTGCTGATCACTGTCGTCGTCTTTTCCCCTTCTCCGAGAGAAAGATGGATTCCAAGTCATCCACCGC CGCTGGAGCTTACAAGACCGACCTGTTCCACGTCATCCACAAGGTCCCCGCTGGCGATTCCCCCTATGTCAAGGCCAAGCACGTCCAGGCAAGATTCTCA CGAATTTTGAATTTTGAAAAAATCTTTGAAAAGGCAGTATCCATGTTCTGGGCAGCCATTAACGCAGGGGACAGGGTGGACAGTGCATTGAAAGACATGG CTGTTGTGTTAAAGCAATTGAATCGTTCTGACGAAGCAATTGAAGCCATCAAGTCGTTTCGTCATCTCTGTGTTCCAGAGTCTCAGGAATCCATTGACAA CGTACTCGTTGAACTCTACAAGAGGTCTGGAAGGGTGGAAGAAGAGATAGAAATGCTTCTGAGGAAGCTGAAGAACATTGAAGAAGGGATGGTATTCGGT GGGAGGAAGACCAAAGTTGCAAGGTCTCAAGGGAAGAAGATTCAAATCACCATTGAACAAGAAAAAGTTCGAATCTTGGGGAACTTGGCTTGGGCTTATT TGCAGCAGCATAACTATGGCTTAGCTGAACAGCATTACAGGAAAGCTGTGTCATTGGAGGCTGATAAGAACAAGCAATGCAACTTGGCAGTGTGTCTGAT GCATATGAACAAGCTTTCAGAAGCGAGAGCTTTGCTTCAAGCTGTGAGAGGTTCATGCGGTAATAAACCGATGGATGAATCGTATGCGAAATCTTTCGAG CGGGCGTATCAGATGTTGACTGATTCCGAGCGAGGAACTTCTTCGCAATCGAGTAATGAACCCTCTCTAGATCATGTATGGAGGGAATGTGCCTATCTTG CAAGCCCAGTTGGGAGCTTTGGAGGAAATTTCAACTCAGTTAACACCATGCCCAGAAGGCAGCATCACCGGTCGATTTTCGCAACTTCACCGATGCCTGT TCTGTTCTCCCAGCCAAGAAGGTGTCTGTTCGTGGCTGATGGAGGAAGTCTCAATCATACCCCTCAGTTGAGATCTCAACCTAGATCTGCTGCTGCTGGC TCTCCTTCTGATGGAGACTGGAGGAAGCCATGGACACAAACTGCTGCTGGAATTGAGAACACTGCTACCAGTACAGTCGTTAAGATTCCTGTAAAGGAGA CAATGGTGAGTGATAATACAGGATCAGAAGCTGCTTCAGTTGAGGAAGAGAGCAGCACCAGCTACAACAAAAGCTGGGCGGACATGGTTGAAGAAGAGGA AGAGCTAGAAAAGCAAGTGCTAGGATGGATGATTGATGATGGGGAAAAAGTAGGAGGATCACTGGATGAGAACTGGGATTCAAACGTGGATACTGATGCA AAGAGTACGACATCAAAATCGAAAACTGTTCGAAAGCTCTGCTTTGATGGAGGAGCTGGAGCTGGGAAGAAGATGATAAGAAATCGTCTGCAGGTATTCA AGGACATCACTCCAGCACTGTGA
AA sequence Show only first row Show all	>Lus10008852 pacid=23144251 polypeptide=Lus10008852 locus=Lus10008852.g ID=Lus10008852.BGIv1.0 annot-version=v1.0 MRFKKDDDGDYNNGGEKRAVVNCVGKVQVRGFLTPPPTWTPSHSRADHCRRLFPFSERKMDSKSSTAAGAYKTDLFHVIHKVPAGDSPYVKAKHVQARFS RILNFEKIFEKAVSMFWAAINAGDRVDSALKDMAVVLKQLNRSDEAIEAIKSFRHLCVPESQESIDNVLVELYKRSGRVEEEIEMLLRKLKNIEEGMVFG GRKTKVARSQGKKIQITIEQEKVRILGNLAWAYLQQHNYGLAEQHYRKAVSLEADKNKQCNLAVCLMHMNKLSEARALLQAVRGSCGNKPMDESYAKSFE RAYQMLTDSERGTSSQSSNEPSLDHVWRECAYLASPVGSFGGNFNSVNTMPRRQHHRSIFATSPMPVLFSQPRRCLFVADGGSLNHTPQLRSQPRSAAAG SPSDGDWRKPWTQTAAGIENTATSTVVKIPVKETMVSDNTGSEAASVEEESSTSYNKSWADMVEEEEELEKQVLGWMIDDGEKVGGSLDENWDSNVDTDA KSTTSKSKTVRKLCFDGGAGAGKKMIRNRLQVFKDITPAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20900		TDM1, MS5	MALE-STERILE 5, Tetratricopept...		Lus10008852 [exp]	0	1
AT2G05910			Protein of unknown function (D...		Lus10033432 [exp]	16.6	0.8922
AT1G19530			unknown protein		Lus10002540 [exp]	29.9	0.8893
AT2G46150			Late embryogenesis abundant (L...		Lus10007904 [exp]	32.2	0.8755
AT1G60010			unknown protein		Lus10030835 [exp]	33.5	0.8892
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	43.8	0.8839
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018500 [exp]	46.2	0.8622
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10014658 [exp]	51.3	0.8828
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10010747 [exp]	53.6	0.8751
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10024038 [exp]	54.9	0.8773
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042934 [exp]	55.2	0.8772

Compare expression of checked genes

Lus10008852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.