Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30460 414 / 4e-133 C3HZnF CPSF30, ATCPSF30 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) AT4G21130 379 / 4e-122 EMB2271 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) AT4G05410 374 / 1e-119 YAO YAOZHE, Transducin/WD40 repeat-like superfamily protein (.1) AT4G11970 77 / 1e-14 YTH family protein (.1.2.3) AT5G52820 77 / 2e-14 WD-40 repeat family protein / notchless protein, putative (.1) AT1G48630 71 / 1e-12 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 70 / 1e-12 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G11160 68 / 3e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 66 / 3e-11 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 66 / 6e-11 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023254 [exp] 627 / 0 AT1G30460 688 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Lus10023255 [exp] 610 / 0 AT4G21130 517 / 0.0 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 78 / 1e-14 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10029493 [exp] 78 / 1e-14 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10006706 [exp] 76 / 2e-14 AT4G11970 335 / 1e-114 YTH family protein (.1.2.3) Lus10007048 [exp] 75 / 5e-14 AT4G11970 335 / 1e-113 YTH family protein (.1.2.3) Lus10017570 [exp] 73 / 2e-13 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017569 [exp] 69 / 3e-12 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003080 [exp] 69 / 3e-12 AT1G18080 506 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G061000 [exp] 457 / 1e-151 AT4G21130 513 / 9e-180 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G089901 [exp] 448 / 9e-146 AT1G30460 613 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.007G107900 [exp] 441 / 1e-145 AT4G21130 505 / 2e-176 EMBRYO DEFECTIVE 2271, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G357800 [exp] 436 / 4e-141 AT1G30460 602 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, cleavage and polyadenylation specificity factor 30 (.1.2) Potri.001G113500 [exp] 77 / 1e-14 AT4G11970 398 / 5e-138 YTH family protein (.1.2.3) Potri.009G058000 [exp] 75 / 8e-14 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.012G052700 [exp] 67 / 2e-11 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 66 / 6e-11 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.007G009500 [exp] 65 / 6e-11 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G041600 [exp] 65 / 6e-11 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0178 [flax] [poplar] PUA PF04146 [flax] [poplar] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Lus10008853 pacid=23144236 polypeptide=Lus10008853 locus=Lus10008853.g ID=Lus10008853.BGIv1.0 annot-version=v1.0 ATGGAGGACACGGAGGGAGTCCTCAGCTTCGACTTCGAAGGCGGCCTCGACTCCGGCCCCGCCCACCCTACCGCCTCCATGCCAATTATCTCTCCCGATA ACTCAGCCTCCGCTTCCGCCGCAGCTGTAACTAATCTCTCCACCCCCTCCGTCCCTCCCACCGACCCCTCCTCCAACTATCAACCAGGGCGGCGGAGTTT CCGGCAGACTGTCTGCCGCCACTGGCTTCGTAGCCTCTGTATGAAGGGCGACGCGTGCGGCTTCCTCCATCAGTACGACAAGGCTCGTATGCCTGTTTGC CGCTTCTTTAGGCTTTATGGTGAGTGCCGGGAGCAAGATTGCGTGTACAAGCACACCAATGAGGATATCAAGGAATGCAATATGTACAAGTTGGGATTTT GTCCAAATGGACCAGATTGTCGATATAGGCATGCAAAGCTCCCTGGACCTCCCCCCTCAGTAGAAGAAGTTCTCCAGAAGATTCAGCAGTTGCCCTCATA CTACGGCCAAAACAAGTTTTTCCAACAACGAGGTGGCTATCATCAACAAGGTGATAGACCACAGTTTCCCCAGGGCCCCAACCATATCAACCAACCTGGA AATGTGCGGCCTTCAGCTGCAGAATCTGCTAATATGCAACCCCACGAGCAGCTGCCACAACAACAACAACCACAGCAGCAACAGCTTTTACCACAGCAAC AGGTCGGCCAGACACAGCTACAGAATGCCCCCAATGGTGTGTCTAATCAGCCTAACAGAACATCGACTCCCTTGCCTCCGGGATTATCTAGGTGTGTTCA GAGTTCTGAGGGTTGTGCAAAGATGACTTCAAAGATTGGTGCTACTATTGGAGGAGGGAATTGGAAATATCAACATGGCACTGCTCATTATGGACGAAAT TTCTCTGTCAAGTGGTTGAAGTTATGTGAGCTATCATTCCACAAAACTAGACATTTGAGGAATCCGTATAACGAGAACTTACCAGTGAAGATTAGTAGAG ATTGTCAGGAGTTGGAGCCTTCCGTTGGAGAGCAGCTGGCTTCCTTGCTTTACCTTGAGCCAGATAGTGAACTGATGGCGATTGCAGTTGCAGCAGAAGC TAAGCGAGAAGAAGAAAAGGCAAAGGGAGTAAATACCGAGAATGAAAACCCTGACATTGTCCTATTTGATGACAACGAAGAAGAAGAGGAAGAAGAAAGT GAAGAAGAGGAAGAGAGCTTCGGGCAGCCACCAGGGCCACCAATGCCAATGCAAGGAAGAGGGAGAGGGAGAGGACTAATGTGGCCACCACAGATGCCAC CGATGAGCCGTGGAATGAGACCCATGCCCGGATTGCGAGGATTCCCTCCGATGATGATAGGCGGCGATGGATTTCCTTTCGGACCACCTGATGGTTTTGG GATGCCAGATCCTTTCGCACCTCGAGGGTTCAACCCCTACGGTCCCAGGTTTTCCGGTGACTTCCCGGGTCCTGGAGCTGGTATGATGTTCCCCGGGAGA CCCCCTCAGTTTCCACCCGGTGGCTTCGGGATGAACATGGGTCCATCGCGGGGCCCCTTTATGGGAGGGATGGGACCCGGTGCTCCGAATCCAATGCGAG GTGGGAGGCCTCCAGGGATGCTACTTCAGCCACTTCAAGGCCCACCGCCCCACAACAACATGAGATCGGTTAGAAGAGATTCGAGGCCGGATGATGGAGG ACCAAAGGGTGCAAATGAAGAGCAGTTTGGTGGAGGGAATAGCTTCAAGAACGATGAGAGTGAGAGCGAGGATGAAGCGCCAAGGCGGTCGAGACACGGA GAGGGGAGGAAGAAGAGACGAGGCTCCGAAGGAGAAGATAGTGGGAAAAGTGAGAAATATAAGTGGCCAACTGATAAGGTATTGAAGTCCCATGGAGTTA AGAATCCTGAGGGTAGAGCTACCAATCATAGTAGAAGTATTTTTGCTTTAGCTGTTAGCTCAGATGGGCGTTACTTGGCAACTGGTGGGTTGGATCGGCA CATTCATTTGTGGGATACTCGAACTCGTGAACATGTTCAGGCATTCCCGGGCCACCGAGGAGCTGTTTCATGTCTAGCTTTTAGGCATGGGACTTCAGAA CTCTACTCTGGTTCATATGACAGATCAGTCAAGATATGGAATATTTCAGACAGGACTTACATAAACACGTTGTTTGGCCATCAGAGTGACGTATTGTCAA TCGATTGCCTGCGGAAAGAAAGGGTTTTGGCTGTTGGGCGGGATCGGACTATGCAATTCTTTAAGGTTCCTGAGGAATCCCGAGTGATATTTCGTTCGTC AACTTCAGCTCTAGAAAGCTGTTGTTTCATCGATAACGAGGACTTCTTCTCCGGCTCTGACGACGGCAGTGTCGAGCTTCGGACTGTACAAAGGAAGAAG CCCGTGTGCATTGTTAAGAATGCTCATACTTCGCCATCTAATCTCGAGAGTGAAGAAAAGAATGACGGGAAGTCCTCTCCCTCTGTTGGAGCGCCTACCT GGGTAAGCTCGGTTGCTGTATGCAGAGGAAGCGACTTGGGCGCATCAGGAGCTGGCAGCGGTTTAGTCCGCTTATGGTCTTTAGATAATTCTCCAAAATC CATCAAGCCCTTGTTTGATCTCCCTCTGGTTGGCTTTGTAAACTCCATGGCTTTCGCAAAATCTGGCAAGTTCCTAGTTGCAGGTGTTGGCAAGGAACCA CGACTCGGACGATGGGGAAGCATACCAGATGCTCAAAATGGAGTAGCAATTCATCAACTCCAGCTTTCGGAGGAAGTATACGACTTATCATCCTTGAAAT AG
AA sequence Show only first row Show all	>Lus10008853 pacid=23144236 polypeptide=Lus10008853 locus=Lus10008853.g ID=Lus10008853.BGIv1.0 annot-version=v1.0 MEDTEGVLSFDFEGGLDSGPAHPTASMPIISPDNSASASAAAVTNLSTPSVPPTDPSSNYQPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVC RFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPSVEEVLQKIQQLPSYYGQNKFFQQRGGYHQQGDRPQFPQGPNHINQPG NVRPSAAESANMQPHEQLPQQQQPQQQQLLPQQQVGQTQLQNAPNGVSNQPNRTSTPLPPGLSRCVQSSEGCAKMTSKIGATIGGGNWKYQHGTAHYGRN FSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAIAVAAEAKREEEKAKGVNTENENPDIVLFDDNEEEEEEES EEEEESFGQPPGPPMPMQGRGRGRGLMWPPQMPPMSRGMRPMPGLRGFPPMMIGGDGFPFGPPDGFGMPDPFAPRGFNPYGPRFSGDFPGPGAGMMFPGR PPQFPPGGFGMNMGPSRGPFMGGMGPGAPNPMRGGRPPGMLLQPLQGPPPHNNMRSVRRDSRPDDGGPKGANEEQFGGGNSFKNDESESEDEAPRRSRHG EGRKKRRGSEGEDSGKSEKYKWPTDKVLKSHGVKNPEGRATNHSRSIFALAVSSDGRYLATGGLDRHIHLWDTRTREHVQAFPGHRGAVSCLAFRHGTSE LYSGSYDRSVKIWNISDRTYINTLFGHQSDVLSIDCLRKERVLAVGRDRTMQFFKVPEESRVIFRSSTSALESCCFIDNEDFFSGSDDGSVELRTVQRKK PVCIVKNAHTSPSNLESEEKNDGKSSPSVGAPTWVSSVAVCRGSDLGASGAGSGLVRLWSLDNSPKSIKPLFDLPLVGFVNSMAFAKSGKFLVAGVGKEP RLGRWGSIPDAQNGVAIHQLQLSEEVYDLSSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10008853 [exp]	0	1
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10009390 [exp]	2.2	0.9144
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Lus10020541 [exp]	3.2	0.9022
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10039081 [exp]	4.5	0.8810
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	5.3	0.8400
AT5G41970			Metal-dependent protein hydrol...		Lus10000877 [exp]	8.0	0.8880
AT3G18600			P-loop containing nucleoside t...		Lus10027240 [exp]	10.1	0.8748
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10017214 [exp]	11.3	0.8684
AT1G15870			Mitochondrial glycoprotein fam...		Lus10026060 [exp]	12.0	0.8397
AT1G75640			Leucine-rich receptor-like pro...		Lus10033924 [exp]	12.8	0.8939
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	13.0	0.8706

Compare expression of checked genes

Lus10008853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.