Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49250 313 / 6e-104 IDN1, DMS3 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) AT5G24280 138 / 2e-35 GMI1 gamma-irradiation and mitomycin c induced 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023253 [exp] 615 / 0 AT3G49250 359 / 7e-122 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008854 [exp] 571 / 0 AT3G49250 289 / 1e-95 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10030244 [exp] 220 / 2e-68 AT3G49250 241 / 2e-76 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10003997 [exp] 215 / 1e-66 AT3G49250 226 / 7e-71 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10022400 [exp] 147 / 3e-38 AT5G24280 1270 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012600 [exp] 437 / 2e-152 AT3G49250 435 / 3e-151 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016000 [exp] 429 / 4e-149 AT3G49250 426 / 8e-148 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.002G172000 [exp] 284 / 2e-93 AT3G49250 311 / 1e-103 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016100 [exp] 170 / 3e-46 AT5G24280 1107 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008855 pacid=23144233 polypeptide=Lus10008855 locus=Lus10008855.g ID=Lus10008855.BGIv1.0 annot-version=v1.0 ATGGAAGTGGATCAGAATGAAAGGGGGATAGTTCCCTGGGAGGCAACACAAAATGGAGGGTTTACACGAGCCCAATCCGACACCCTTAACTCTAAGAGAC TTCAAGATGATCTTCAAACCTTGGGGCTGAAAATCAAGCAACAAGAGAACAATATAAAGCTTCTGAGGAATCAGAAGAACAAGCTAGATGATTCTATTCT GGATACACAAGTTGTTCTTGGTAAGTACCATGCTTCTGCTGGAATGGGCATTGGCAATGAAGCACACACCTCCAGCCAAAGTGAGGAGGAAACAATCAAA CAGATTCTCCAGCATGAATTTTCAGCTGCCGGCATTTTATGCCAACTGAGAGTAAATCAAACATCATCTGGCTCTTACATGACGTTGATGAAAGATGTAG TCGGAATTGTTGCCACACTTGGTCGAGTAGATGATGATAATCTTAGCAGGATGTTATCTCAGTTCCTAGGAACGCAAACTATGCTAGCAGTTGTATGCAA GTCTTATGAAGGTGTGAAAGCTCTGGAGACATATGACAAAGAAGGACACACTATCAAGGACTCCGCCAGGGTTCCTTTTGTGAAAATTAAACCTAATCAG TTTCTCTTCTGCAGGCCTTATTATGGTGAATTCGTTATGGATGACCCTCAAAGAAGGTTGGATCTTCTGAAGCCAAAATTTCCAAATGGAGAGAGTCCTC CTGGATTTCTTGGCTTTGCTGTAAATATGATAAACGTGGAATACATCAACTTGTTTTATCTGACATCTGGCGGACATGGCCTCAGGGAGACTCTGTTTTA CAATATCTTCTCGCGCTTGCAAGTTTACAAAACCAGGAAAGATATGTTACTTTCTCGTCCTTGTATATCTGATGGAGCCATTTCCTTGGATGGGGGCATG ATTAGGCAACCAGGTATCTTTTCCCTAGGCATCGGGGAGGAGCTGAAGATAAGGTTCCCGAAACGTTCAGTATCAAGCGTGTCAAGTAAGTACAGTGAAA CTGAGAAACAACTAATGGAGATGCGATGGAAAAAGGAGAAAATGGAAGAGGAAATGAAGAGGGCACAAGTATTGTTAGATGGTGCAAGGAACCAATTTCA AAAGAAGAAGGAAGAGTTCGTCAAGTTCCTTGCTGAAAGCTCAGCATATCAAGCTCAGGTAACCCCACATCTTCATGTTTCGGTACAGTGA
AA sequence Show only first row Show all	>Lus10008855 pacid=23144233 polypeptide=Lus10008855 locus=Lus10008855.g ID=Lus10008855.BGIv1.0 annot-version=v1.0 MEVDQNERGIVPWEATQNGGFTRAQSDTLNSKRLQDDLQTLGLKIKQQENNIKLLRNQKNKLDDSILDTQVVLGKYHASAGMGIGNEAHTSSQSEEETIK QILQHEFSAAGILCQLRVNQTSSGSYMTLMKDVVGIVATLGRVDDDNLSRMLSQFLGTQTMLAVVCKSYEGVKALETYDKEGHTIKDSARVPFVKIKPNQ FLFCRPYYGEFVMDDPQRRLDLLKPKFPNGESPPGFLGFAVNMINVEYINLFYLTSGGHGLRETLFYNIFSRLQVYKTRKDMLLSRPCISDGAISLDGGM IRQPGIFSLGIGEELKIRFPKRSVSSVSSKYSETEKQLMEMRWKKEKMEEEMKRAQVLLDGARNQFQKKKEEFVKFLAESSAYQAQVTPHLHVSVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	0	1
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008854 [exp]	1.0	0.9189
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	3.5	0.8790
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	3.5	0.8920
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10029476 [exp]	4.0	0.8942
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10018741 [exp]	6.0	0.8673
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10038982 [exp]	6.2	0.8491
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10010616 [exp]	6.6	0.8170
AT3G27390			unknown protein		Lus10014881 [exp]	7.1	0.8375
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Lus10038407 [exp]	7.2	0.8361
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10030971 [exp]	8.5	0.8448

Compare expression of checked genes

Lus10008855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.