Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51280 803 / 0 DEAD-box protein abstrakt, putative (.1) AT4G33370 705 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 268 / 3e-83 DEA(D/H)-box RNA helicase family protein (.1) AT2G42520 262 / 2e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47330 265 / 3e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 257 / 1e-77 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT3G58570 256 / 6e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G20920 254 / 7e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G63120 248 / 1e-74 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G33730 245 / 2e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023252 [exp] 930 / 0 AT5G51280 1015 / 0.0 DEAD-box protein abstrakt, putative (.1) Lus10012899 [exp] 340 / 4e-115 AT5G51280 318 / 1e-106 DEAD-box protein abstrakt, putative (.1) Lus10037646 [exp] 263 / 5e-81 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 263 / 5e-81 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10000849 [exp] 264 / 1e-80 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015976 [exp] 264 / 2e-80 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 260 / 4e-80 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 263 / 7e-80 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043334 [exp] 257 / 1e-77 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G224000 [exp] 829 / 0 AT5G51280 1072 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.005G047301 [exp] 368 / 2e-122 AT5G51280 520 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.003G038300 [exp] 266 / 3e-82 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 265 / 3e-81 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G194600 [exp] 265 / 4e-79 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G083000 [exp] 260 / 7e-79 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G217800 [exp] 260 / 7e-79 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G084600 [exp] 256 / 2e-77 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G007900 [exp] 256 / 3e-77 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 254 / 1e-76 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10008856 pacid=23144260 polypeptide=Lus10008856 locus=Lus10008856.g ID=Lus10008856.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAAGACGACTATGTGGAGTATGTGCCGGTAGCAAAGCGTCGGGATCTAGAAGCACAAAAGATTCTTCAACGGAAGGGGAATGCAGTAGCTT TTGAAGATGAACTCGAGAAGTCTAAGCAAGAGGAAGCAAAACCGAGTCTCCTGGTGAAAGCTACGCAGCTGAAGCGGGAACAACCCATTGTCACCGAGAC GGAGCAGATCATTCAACAGGAGAAGGAAATGATCGAGCACCTCTCTGATAGGAAGACCCTTATGTCCGTCCGAGAATTGGCGAAAGGAATCACTTATTCA GAGCCTCTGTTGACGGGATGGAAGCCTCCACTAAGCATCAGGAGAATGTCAAAAAAGCAATGCGATGCAATTCGGAAGCAGTGGCACATTCTGGTAGAAG GAGACGATATCCCTCCGCCGATCAAGAACTTTAGAGAGATGAGGTTTCCTGAACCGATTTTGAGGAACTTGAAGCTTAAGGGGATTGTTCAGCCGACTCC GATTCAAGTTCAGGGGCTTCCTGTTATCTTAGCTGGAAGAGATATGATCGGGATTGCATTTACGGGGTCTGGGAAAACTCTCGTTTTTGTACTGCCAATG ATTATGATCGCTTTGCAGGAGGAATGCATGATGCCTTTACTGCCAGGGGAAGGACCGTTTGGGCTGGTTGTTTGTCCTTCGAGAGAACTTGCTAGGCAGA CTTTTGATGTGGTTGAGCAGTTTTTGACTCCGATGAGGGAGGCTGGATATCCTGAATTGAGAACTTTGCTCTGTATCGGTGGAGTGGAGATGAAATCACA GTTGGAGATCGTGGGTGCATATTGCTGTTGCCACTCCTGGAAGCCATTGAATGTTACATTAGGGGTCATTTGGCCTTTTCCTACCTGTGCTAGTTGTTGG TTTTCGGGTCTTTCCGGACTAATTCTTGCGCATAAGGAGATAATCAGCATGAAATTGCAATGGTATCTAACGCTGGATGAGGCAGATAGGTTAGTGGATC TAGGTTTCGAAGACGACATCAGGGTAGTATTCGACCACTTCAAAGCTCAAAGGCAGGCTCTCCTCTTCTCCGCAACCATGCCCACCAAAATCCAGAACTT CGCCAAAAGCGCTCTATTAAAGCCGGTGATAGTCAACGTGGGGCGAGCCGGTGCAGCGAATCTCGATGTGATTCAAGAGGTTGAGTACGTAAAACGAGAA GCCAAGCTCATCTACCTCCTTGAATGCCTGCAAAAAACACCCCCTCCCGTCTTGGTCTTCTGCGAGAACAAAGTCGACGTGGACACCATCCAAGAGTATC TCCTTTACAAGGGAGTCGAAGCCGTCTCGATCCACGGAGACAAAGACCAAGCCGACCGAGAGGAAGCGATCAAATTCTTCAAAGCGGGGAAAAAGGACGT CCTGGTCGCCACGGATGTTGCCTCGAAGGGTTTGGATTTCCCCGACATCCAGCACGTCATCAACTACGACATGCCGGCGGAGATTGAGAACTACGTCCAC AGGATCGGACGAACCGGAAGGTGCGGCAAGACTGGGATCGCTACGACTTTTATTAACAATACCCAGAGCGAGACTACGTTGCTCGATTTGAAGCACCTGT TGCAAGAAGCTAAGCAGAGGATCCCGCCCATTCTGGCCGAGTTGGATGATCCGATGGAGTTTGGAGACGAGATTCAAAATGCGAGGTGA
AA sequence Show only first row Show all	>Lus10008856 pacid=23144260 polypeptide=Lus10008856 locus=Lus10008856.g ID=Lus10008856.BGIv1.0 annot-version=v1.0 MEEEDDYVEYVPVAKRRDLEAQKILQRKGNAVAFEDELEKSKQEEAKPSLLVKATQLKREQPIVTETEQIIQQEKEMIEHLSDRKTLMSVRELAKGITYS EPLLTGWKPPLSIRRMSKKQCDAIRKQWHILVEGDDIPPPIKNFREMRFPEPILRNLKLKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM IMIALQEECMMPLLPGEGPFGLVVCPSRELARQTFDVVEQFLTPMREAGYPELRTLLCIGGVEMKSQLEIVGAYCCCHSWKPLNVTLGVIWPFPTCASCW FSGLSGLILAHKEIISMKLQWYLTLDEADRLVDLGFEDDIRVVFDHFKAQRQALLFSATMPTKIQNFAKSALLKPVIVNVGRAGAANLDVIQEVEYVKRE AKLIYLLECLQKTPPPVLVFCENKVDVDTIQEYLLYKGVEAVSIHGDKDQADREEAIKFFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH RIGRTGRCGKTGIATTFINNTQSETTLLDLKHLLQEAKQRIPPILAELDDPMEFGDEIQNAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51280			DEAD-box protein abstrakt, put...		Lus10008856 [exp]	0	1
AT1G16010		AtMRS2-1, AtMGT...	magnesium transporter 2 (.1.2....		Lus10026063 [exp]	3.2	0.7115
AT3G62200			Putative endonuclease or glyco...		Lus10038041 [exp]	5.9	0.6670
AT4G25330			unknown protein		Lus10012314 [exp]	9.2	0.7048
AT3G50910			unknown protein		Lus10025996 [exp]	9.4	0.7361
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	11.1	0.7370
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	11.5	0.7437
AT5G52980			unknown protein		Lus10000151 [exp]	12.0	0.7160
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	14.2	0.7417
AT3G22430			unknown protein		Lus10021917 [exp]	17.7	0.7030
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10024885 [exp]	19.4	0.7213

Compare expression of checked genes

Lus10008856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.