Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58360 63 / 6e-13 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 61 / 5e-12 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G23810 56 / 2e-10 AAP7 amino acid permease 7 (.1.2) AT1G44100 55 / 4e-10 AAP5 amino acid permease 5 (.1) AT5G49630 54 / 9e-10 AAP6 amino acid permease 6 (.1) AT1G77380 52 / 3e-09 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G09220 50 / 2e-08 AAP2 amino acid permease 2 (.1) AT5G63850 49 / 7e-08 AAP4 amino acid permease 4 (.1) AT1G25530 38 / 0.0005 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007235 [exp] 74 / 2e-16 AT5G49630 720 / 0.0 amino acid permease 6 (.1) Lus10028236 [exp] 72 / 5e-16 AT5G49630 687 / 0.0 amino acid permease 6 (.1) Lus10042740 [exp] 60 / 1e-11 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 60 / 1e-11 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 60 / 1e-11 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10029702 [exp] 58 / 4e-11 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 57 / 2e-10 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 56 / 2e-10 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 56 / 4e-10 AT1G77380 759 / 0.0 amino acid permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112100 [exp] 70 / 2e-15 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.001G470200 [exp] 59 / 2e-11 AT5G09220 543 / 0.0 amino acid permease 2 (.1) Potri.001G470000 [exp] 58 / 3e-11 AT5G23810 570 / 0.0 amino acid permease 7 (.1.2) Potri.011G167000 [exp] 58 / 5e-11 AT5G23810 573 / 0.0 amino acid permease 7 (.1.2) Potri.006G236000 [exp] 57 / 6e-11 AT1G10010 580 / 0.0 amino acid permease 8 (.1) Potri.009G085000 [exp] 56 / 3e-10 AT1G58360 546 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Potri.011G167200 [exp] 55 / 5e-10 AT5G23810 518 / 0.0 amino acid permease 7 (.1.2) Potri.005G068900 [exp] 55 / 6e-10 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.011G167532 [exp] 54 / 7e-10 AT5G23810 396 / 1e-132 amino acid permease 7 (.1.2) Potri.007G100100 [exp] 54 / 7e-10 AT5G09220 768 / 0.0 amino acid permease 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008858 pacid=23144216 polypeptide=Lus10008858 locus=Lus10008858.g ID=Lus10008858.BGIv1.0 annot-version=v1.0 ATGGTGATATACGGGTGCATCCAGCTGATATTGAGCCAGATCCCCGAGTTTCACAAATTTTCATGGCTATCAGTTATGGCTTCAATCATATCTTTTGGCT ATTCGAGCATCGGCCTTGGACTCTCCATTGCCATATTCGGGACTGTTCTGAGCTGTTTCCTTCTAGCTACTGACGGTGTATTTCCCTGTGGAGAAGCACA TTGCCCGGACACAGACTCTCAGATCCTCCGTCAAGTGGATTTTGCTGAAGATGCTGACGTGGGCATGCTTGGTGTCTCCCTTCTTGCCGGCATCGGATAT CTCTAA
AA sequence Show only first row Show all	>Lus10008858 pacid=23144216 polypeptide=Lus10008858 locus=Lus10008858.g ID=Lus10008858.BGIv1.0 annot-version=v1.0 MVIYGCIQLILSQIPEFHKFSWLSVMASIISFGYSSIGLGLSIAIFGTVLSCFLLATDGVFPCGEAHCPDTDSQILRQVDFAEDADVGMLGVSLLAGIGY L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10008858 [exp]	0	1
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10043380 [exp]	10.2	0.7583
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	10.3	0.8015
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	15.1	0.7930
AT4G31880			unknown protein		Lus10026078 [exp]	16.5	0.7918
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10025662 [exp]	21.5	0.7912
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	24.1	0.7912
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	26.4	0.7912
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	28.5	0.7912
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	30.5	0.7912
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	32.3	0.7912

Compare expression of checked genes

Lus10008858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.