Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41150 536 / 0 unknown protein AT3G56750 530 / 0 unknown protein AT4G12700 86 / 9e-18 unknown protein AT2G04280 82 / 9e-17 unknown protein AT4G08810 82 / 1e-16 SUB1 calcium ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023250 [exp] 768 / 0 AT2G41150 547 / 0.0 unknown protein Lus10022403 [exp] 640 / 0 AT2G41150 560 / 0.0 unknown protein Lus10018111 [exp] 632 / 0 AT2G41150 555 / 0.0 unknown protein Lus10041091 [exp] 95 / 7e-21 AT2G04280 745 / 0.0 unknown protein Lus10036415 [exp] 94 / 3e-20 AT2G04280 828 / 0.0 unknown protein Lus10039176 [exp] 76 / 1e-14 AT4G08810 845 / 0.0 calcium ion binding (.1) Lus10013761 [exp] 76 / 2e-14 AT4G08810 836 / 0.0 calcium ion binding (.1) Lus10039175 [exp] 61 / 4e-10 AT4G08810 463 / 5e-163 calcium ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035600 [exp] 592 / 0 AT3G56750 549 / 0.0 unknown protein Potri.006G040400 [exp] 583 / 0 AT3G56750 567 / 0.0 unknown protein Potri.014G170200 [exp] 89 / 7e-19 AT2G04280 862 / 0.0 unknown protein Potri.001G005500 [exp] 82 / 1e-16 AT4G08810 762 / 0.0 calcium ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008860 pacid=23144210 polypeptide=Lus10008860 locus=Lus10008860.g ID=Lus10008860.BGIv1.0 annot-version=v1.0 ATGGCGACAATTCACAAACCACTGAAGCTGAAGAAGCCCAGACTGAGATCGCCAATCCCCAACCTGCTCATCTGGTTAGTAGCCGCCGCCATTGGGCTTA TCTTCCTTTTCTCGGCGAGTGATTTCTCCATCGACGACTCTATGAAACTCATAAAGCGGCTGATGAGGTCCAAGCGGCCCAGGCGGGTGCATACTCTGCA TGACAAGTATTTGTACTGGGGGAGTAGGATCGATTGTCCTGGCAAGCATTGCGAATCTTGTGAAGGTTTGGGTCACCAGGAGTCTAGCCTCAGGTGTGCT CTTGAGGAGGCAATGTTTCTTAACAGAACTTTTGTCATGCCTTCTAGAATGTGCATCAATCCTATACATAATATGAAGGGAATTCTCCATCGTTCTGATA ATTCAACTTCTGAAGAAAGGTGGACATCAAGCTCTTGCAGTGTGGAGTCCTTTTACGATATAGACTTCATGTCTGAAACCGTACCAGTTATCTTGGACAA TTCAATAGAGTGGTTTTACCTTGTTTCAATTGCAATGAGATTGGGATCGAGAGGAATTGCCAATGTACAAGGAGTTAGTCGGGCTGAACTGAAAGAAGGC AGCCAGTACACCAATCTGTTGCTCATAAATCGAACTGCCAGTCCTCTTTCATGGTTTATGGAATGCAAGGGAAGAAGCAACCGCAGTGATATTATGCCGC CATACTCATTTCTTCCTTCAGTAGCGTCAGAGAGATTGCGGGATGCTGCCGACTTGATCATAGCTAAACTTGGCGATTATGATGCTATTCATGTTCGCCG CGGAGACAAAATCAAAACAAGGAATGACAGATTTGGTGTTCCTCGCAGCTTACACCCCCATCTGGACAGGGATACACGCCCAGAATACATTCTTCAGAGA ATCGGAAAATGGGTCCCACCTGGAAGAACTGTTTTTATTGCTTCAAATGAGAGGACGCCAGGTTTCTTTTCCCCTCTTTCTGTCAGATACAAATTAGCAT ATTCTTCAAACTACAGCAGGATCCTGGACCCTTTGATTCAGAACAACTACGAATTGTTCATGATCGAAAGGCTGATAACGATGGGTGCGAAAACATTCAT CAGAACGTTCAAGGAAGATGATACAGATTTAAGCCTCACTGATGACCCAAAGAAGAACACCAAGATATGGCAACTCCCCGTCTATACCATGGCCGAAGTT CGGGATAAATGA
AA sequence Show only first row Show all	>Lus10008860 pacid=23144210 polypeptide=Lus10008860 locus=Lus10008860.g ID=Lus10008860.BGIv1.0 annot-version=v1.0 MATIHKPLKLKKPRLRSPIPNLLIWLVAAAIGLIFLFSASDFSIDDSMKLIKRLMRSKRPRRVHTLHDKYLYWGSRIDCPGKHCESCEGLGHQESSLRCA LEEAMFLNRTFVMPSRMCINPIHNMKGILHRSDNSTSEERWTSSSCSVESFYDIDFMSETVPVILDNSIEWFYLVSIAMRLGSRGIANVQGVSRAELKEG SQYTNLLLINRTASPLSWFMECKGRSNRSDIMPPYSFLPSVASERLRDAADLIIAKLGDYDAIHVRRGDKIKTRNDRFGVPRSLHPHLDRDTRPEYILQR IGKWVPPGRTVFIASNERTPGFFSPLSVRYKLAYSSNYSRILDPLIQNNYELFMIERLITMGAKTFIRTFKEDDTDLSLTDDPKKNTKIWQLPVYTMAEV RDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41150			unknown protein		Lus10008860 [exp]	0	1
AT2G41150			unknown protein		Lus10023250 [exp]	4.1	0.8374
AT1G11860			Glycine cleavage T-protein fam...		Lus10001441 [exp]	9.1	0.8343
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10039046 [exp]	11.5	0.7649
AT4G19450			Major facilitator superfamily ...		Lus10033271 [exp]	14.3	0.7835
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Lus10015935 [exp]	14.8	0.8283
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	15.5	0.7928
AT1G70280			NHL domain-containing protein ...		Lus10030637 [exp]	16.9	0.7923
AT5G60540		EMB2407, ATPDX2...	EMBRYO DEFECTIVE 2407, pyridox...		Lus10041445 [exp]	21.3	0.8038
AT1G11860			Glycine cleavage T-protein fam...		Lus10001624 [exp]	21.5	0.8143
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	26.5	0.7866

Compare expression of checked genes

Lus10008860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.