Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50790 228 / 2e-74 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT2G39060 222 / 2e-72 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT3G48740 219 / 6e-71 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G23660 215 / 3e-69 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT5G13170 210 / 3e-67 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT4G25010 204 / 3e-65 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT5G50800 203 / 1e-64 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT1G21460 151 / 6e-45 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT4G15920 146 / 4e-43 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 142 / 9e-42 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023249 [exp] 465 / 3e-168 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10024770 [exp] 237 / 6e-78 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 236 / 2e-77 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10040901 [exp] 221 / 3e-71 AT5G13170 236 / 8e-77 senescence-associated gene 29 (.1) Lus10005935 [exp] 221 / 3e-71 AT5G50800 235 / 3e-76 Nodulin MtN3 family protein (.1) Lus10016742 [exp] 219 / 1e-70 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1) Lus10032553 [exp] 216 / 3e-69 AT5G50790 279 / 9e-94 Nodulin MtN3 family protein (.1) Lus10003143 [exp] 214 / 6e-69 AT5G13170 295 / 4e-100 senescence-associated gene 29 (.1) Lus10022436 [exp] 213 / 2e-68 AT5G50790 285 / 5e-96 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G030500 [exp] 243 / 1e-80 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.015G101700 [exp] 226 / 6e-74 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.015G101500 [exp] 218 / 1e-70 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.015G101400 [exp] 217 / 2e-70 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.015G101600 [exp] 213 / 1e-68 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 211 / 5e-68 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.003G166800 [exp] 206 / 5e-66 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.001G060900 [exp] 204 / 5e-65 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.013G013800 [exp] 159 / 1e-47 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 155 / 2e-46 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10008861 pacid=23144254 polypeptide=Lus10008861 locus=Lus10008861.g ID=Lus10008861.BGIv1.0 annot-version=v1.0 ATGGTTGCAGCAAAATTCCTCATCATCAGTCATGAAAAGCTTGCTCTGATTTTCGGTCTACTCGGAAACATCATCTCTTTTCTGGTGTTCTTAGCTCCCC TGCCGACGTTTTACAAAATTTACAAGAAGAAGTCGTCGCAAGGTTTCCACTCGATACCATACGTGACGGCACTGATGAGTGCAATGTTGCTGTTGTACTA TGGACTTTTGAAAACCAATGCGACGCTCATAATTACGATCAATGCCATTGGGTGCGCCATTGAGCTCATTTACCTCTCTGCCTACCTCTTCTACTCACCA ACCAGAGAATTGATGTTTACAGTGAAGATGCTGGTTAGTTCATTGGGAGGATATGGTGGCATGATGCTGGTAACTGTGTTCTGGCTTCATGGTAGCTTAA GGTTGAACACCATTGGATGGATATGTGCTGTGTTCAACATTGCAGTCTTTGCTGCTCCCTTGAGCATTGTGAGAAACGTGATAAAGACGAAGAGCGTGGA GTACATGCCCTTCTCCCTGTCGTTCTTCCTTACGCTCTGCGCCACTGCGTGGTTCTTCTATGGCCTTCTCGTCAACGATTACTACATTGCGCTGCCAAAT GTGCTGGGATTTCTATTTGGGATAACACAGATGGTGCTATACATGATCTACAAGGATGCTGCAAAGGCAGTTGCAGACGGTGAAATCTCGAAGCAAAAGG AAGCAAACAATGCTGCAGTTTTCATTGAAATGGGAGGATCAAATAATAAGCATAATAACTAG
AA sequence Show only first row Show all	>Lus10008861 pacid=23144254 polypeptide=Lus10008861 locus=Lus10008861.g ID=Lus10008861.BGIv1.0 annot-version=v1.0 MVAAKFLIISHEKLALIFGLLGNIISFLVFLAPLPTFYKIYKKKSSQGFHSIPYVTALMSAMLLLYYGLLKTNATLIITINAIGCAIELIYLSAYLFYSP TRELMFTVKMLVSSLGGYGGMMLVTVFWLHGSLRLNTIGWICAVFNIAVFAAPLSIVRNVIKTKSVEYMPFSLSFFLTLCATAWFFYGLLVNDYYIALPN VLGFLFGITQMVLYMIYKDAAKAVADGEISKQKEANNAAVFIEMGGSNNKHNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10008861 [exp]	0	1
					Lus10030762 [exp]	2.4	0.9569
					Lus10005901 [exp]	2.4	0.9237
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10027500 [exp]	3.2	0.8998
					Lus10018996 [exp]	3.5	0.9525
					Lus10013331 [exp]	3.6	0.8904
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	4.0	0.9466
					Lus10008409 [exp]	4.9	0.9494
					Lus10037540 [exp]	8.4	0.8888
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	8.8	0.8958
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	10.0	0.9323

Compare expression of checked genes

Lus10008861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.