Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09700 237 / 1e-70 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) AT3G26932 100 / 2e-22 DRB3 dsRNA-binding protein 3 (.1.2) AT5G41070 87 / 6e-18 DRB5 dsRNA-binding protein 5 (.1) AT2G28380 87 / 8e-18 DRB2 dsRNA-binding protein 2 (.1) AT3G62800 84 / 3e-17 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023248 [exp] 1066 / 0 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10032007 [exp] 95 / 2e-20 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10035176 [exp] 94 / 3e-20 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10000721 [exp] 87 / 7e-18 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 80 / 2e-15 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10002619 [exp] 74 / 2e-13 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3) Lus10003362 [exp] 67 / 3e-12 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 64 / 4e-10 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G153200 [exp] 269 / 1e-83 AT1G09700 224 / 7e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Potri.002G111400 [exp] 265 / 5e-82 AT1G09700 214 / 7e-66 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Potri.005G045700 [exp] 100 / 1e-21 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.013G032400 [exp] 96 / 2e-20 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.017G063700 [exp] 96 / 2e-20 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 95 / 3e-20 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.017G126700 [exp] 92 / 2e-19 AT1G09700 121 / 5e-30 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Potri.009G152900 [exp] 76 / 3e-14 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.013G061500 [exp] 75 / 7e-14 AT3G62800 162 / 3e-45 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.019G038226 [exp] 65 / 4e-11 AT3G62800 146 / 1e-41 double-stranded-RNA-binding protein 4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10008862 pacid=23144231 polypeptide=Lus10008862 locus=Lus10008862.g ID=Lus10008862.BGIv1.0 annot-version=v1.0 ATGTCTAACGGACTTCATGCCGGCCGACTACCACTCCATGCGTCGTCGTCGTCGTCGCAGCAGCAGCAACCTACCGTCGGAAAACGCCCTCGTACCGATA ACAGTATAGCGAGTTGCTATTTATTTAAGAGTCAGCTACAGGAGTATGCGCAAAAGGCAGGAGTTCCTACACCTGTGTATGAGACAACCAAAGAAGGCCG TTCTCATGAACCTTTCTTCAGGTCAACTGTGATAGTGAACGATGTCAGATATGACTCTCTTCCTGGATTTATGAATCGTAAAGCAGCAGAGCAGTCAGCT GCGGAGGTTGCGCTCATTGAGTTGGCTAAATCCAGTGATGCCAATGCTAGCATCTCCCAACCAGCTCATGGAACTGGACTCTGTAAGAACCTGCTTCAGG AATATGCTCAGAAGATGAATTTTGCAGTTCCTTTGTACCAGTGTCAACAGTATGAAACACAACATCGTGGACGTCGTGGACATTCTTTCCAATGTGTTGT GGACATTGGAGGGACGAGGTATATAGGAGCAATGGCAAACACCAAAAAGGAAGCGGAGATAAAAGCTGCAAGAACTGCTTGGTTTGCTATTAAGGAAATC AATATGGACATATCCAGAGGGCCAACTGGTGGAAACTCTAGTTTAACAGTAATTCCCAACAGGAATAGGGTATTGGAGCCGCCGAGTGTTCCAAAGGAGA CAGCCGCTCCTCCCACTGTTAAAAAGGGACGGCGCAAGAAGAACATGATGAAAAGAAAACGTAAAAGAAAGCCTCAAAATGCACTTGGTGAACATTCATC CAATGGAAATCCTGCTGGGGCTGATCTGAAAGGTCTGGAATTACAACATACAAACATGTCGGAAACGGAAGTACCAAAGAGTGCTCTGAATGAACATATC AATAACACTTCTGAGACTGCAGACGATCAGCAAGGATCAGAATGTAAACGGATACGTGTCAGTGAACCAGAAGTTGAAGGGATGAAAGTTGTTACAGGAG AAAGCGTAGTTGAAGGAGTAATTGGTGCTATAGGAGAAAGTAAAGTTGAAGGAATGAGTGGTGCTATAGGAGATATCATAGTCGGAGGAGGGAATGAACA AATGGACGGTGCTATAGGAGAAAGTAAAGTTGAAGGAATGAGTGGTGCTATAGGAAGAGAAATCGTAGTTGGAGGAGGGAATGAACGAATGGAAGGTGCT ATAGGGGAGAGCGAGGTTGAAGGAGTGGATAAACAAATGGAAGGCGCTATAGGAGAAAGTAAAGTTGAAGGAGTGGATGAAGGAATGAGTGATGCTATGG GAGAAATCGTACTTGAAGGAGGAAATGAACTAATGGAAAGTGTTATAGGAGAAAGTAACATTGAAGGACTGGATGAAGGAATGAGTGATGCTATAGGAGA AATCGTACTCGAAGGCAGGAATGTACTAATGGAAGGTGTTACAGGAGAAAGCGAGGTTGAAGTGGATAAACGAACGGAAGGCGCTATAGGAGAAAGTAAA GTTGAAGGAGTAGATGAAGGAATGAGAGGTGCTATCAGAGAAATCATAGTCGAAGGAGGGAATGATCGAAAGGAAGGGGCTGAAAGAGAAAGTGAGGTTG GAGTGGATAAAGGAACCGAAGGTGCCATTGGAGGAAGTGAGGTTGAAGGAGTGGATAAAAGGAAGGAAGGTAGCATAGGAGAAAGCAAAGTTGAAGGAGT AGATGAAGTAATGGAGGTTGCTTTAGGAGGAAGCGAAGTTGAAGGTGTCCAGAGTGGAAGCGTAGTTGAAATTGTGAAAGGAGCACTAAGCGAAAGTATA GTCGAAGGAGTTGAGACTGCTCTAGGTGCTTCAAATGACAGTGTTAAGGATAGCAATCCTACTCCGGAAAACCATCCGGAACCAGTATTGCAAACATGTG GTCCGCTACCAGTTGAAGGAGAGGGTGGCATACAGTCTGCAGTTGAAATTTCGGCACCTGACAGCAATCCTACACTGGGAAACCGTCCTGAACCAGTATT GCAAACGGGTGGTGCGCTACCAGTTGAAGGCAAGGGTGGCATATTGTCTGTAATGGAAATTTCGGCATCTACTTCCAACGAGGATACAGCAACGGTAATT GGCTCGCAGGCTGGTCATGCGATCAAAAGTGCAGATGTCGGAGTTTCAGGTGGTTCAGATGGCCAGAGTAGTGGCTGCAGTGACTAA
AA sequence Show only first row Show all	>Lus10008862 pacid=23144231 polypeptide=Lus10008862 locus=Lus10008862.g ID=Lus10008862.BGIv1.0 annot-version=v1.0 MSNGLHAGRLPLHASSSSSQQQQPTVGKRPRTDNSIASCYLFKSQLQEYAQKAGVPTPVYETTKEGRSHEPFFRSTVIVNDVRYDSLPGFMNRKAAEQSA AEVALIELAKSSDANASISQPAHGTGLCKNLLQEYAQKMNFAVPLYQCQQYETQHRGRRGHSFQCVVDIGGTRYIGAMANTKKEAEIKAARTAWFAIKEI NMDISRGPTGGNSSLTVIPNRNRVLEPPSVPKETAAPPTVKKGRRKKNMMKRKRKRKPQNALGEHSSNGNPAGADLKGLELQHTNMSETEVPKSALNEHI NNTSETADDQQGSECKRIRVSEPEVEGMKVVTGESVVEGVIGAIGESKVEGMSGAIGDIIVGGGNEQMDGAIGESKVEGMSGAIGREIVVGGGNERMEGA IGESEVEGVDKQMEGAIGESKVEGVDEGMSDAMGEIVLEGGNELMESVIGESNIEGLDEGMSDAIGEIVLEGRNVLMEGVTGESEVEVDKRTEGAIGESK VEGVDEGMRGAIREIIVEGGNDRKEGAERESEVGVDKGTEGAIGGSEVEGVDKRKEGSIGESKVEGVDEVMEVALGGSEVEGVQSGSVVEIVKGALSESI VEGVETALGASNDSVKDSNPTPENHPEPVLQTCGPLPVEGEGGIQSAVEISAPDSNPTLGNRPEPVLQTGGALPVEGKGGILSVMEISASTSNEDTATVI GSQAGHAIKSADVGVSGGSDGQSSGCSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10008862 [exp]	0	1
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10023155 [exp]	2.6	0.7864
AT5G45190			Cyclin family protein (.1.2)		Lus10040640 [exp]	3.5	0.7567
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	5.1	0.7796
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	12.7	0.7172
AT1G03760			Prefoldin chaperone subunit fa...		Lus10017711 [exp]	14.4	0.6568
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10012902 [exp]	16.4	0.7026
AT3G05670			RING/U-box protein (.1)		Lus10031468 [exp]	18.2	0.7175
					Lus10032068 [exp]	18.4	0.7358
AT3G24080			KRR1 family protein (.1.2)		Lus10025633 [exp]	20.0	0.7108
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	21.7	0.7095

Compare expression of checked genes

Lus10008862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.