Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53480 1404 / 0 ARM repeat superfamily protein (.1) AT3G08947 986 / 0 ARM repeat superfamily protein (.1) AT3G08943 958 / 0 ARM repeat superfamily protein (.1) AT2G16950 99 / 4e-21 ATTRN1 transportin 1 (.1.2) AT2G16960 72 / 1e-12 ARM repeat superfamily protein (.1.2) AT5G19820 64 / 3e-10 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT4G27640 50 / 7e-06 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008864 [exp] 1746 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 1725 / 0 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1) Lus10041453 [exp] 1315 / 0 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10034318 [exp] 1312 / 0 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1) Lus10023247 [exp] 579 / 0 AT5G53480 509 / 3e-172 ARM repeat superfamily protein (.1) Lus10031905 [exp] 116 / 3e-30 AT5G53480 106 / 7e-28 ARM repeat superfamily protein (.1) Lus10014540 [exp] 86 / 6e-19 AT5G53480 106 / 1e-26 ARM repeat superfamily protein (.1) Lus10023999 [exp] 81 / 4e-15 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10025083 [exp] 80 / 7e-15 AT2G16950 1392 / 0.0 transportin 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010400 [exp] 1502 / 0 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.012G017500 [exp] 1491 / 0 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.006G103300 [exp] 1016 / 0 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1) Potri.016G123600 [exp] 999 / 0 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1) Potri.009G138200 [exp] 79 / 1e-14 AT2G16950 1316 / 0.0 transportin 1 (.1.2) Potri.004G177700 [exp] 72 / 1e-12 AT2G16950 1279 / 0.0 transportin 1 (.1.2) Potri.001G004800 [exp] 55 / 2e-07 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 52 / 2e-06 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10008863 pacid=23144259 polypeptide=Lus10008863 locus=Lus10008863.g ID=Lus10008863.BGIv1.0 annot-version=v1.0 ATGGCTATGGAGGTGACACAGGTGCTTCTGAATGCACAATCGATAGATCGCAATGTTCAGAAGCAAGCTGAGGAGAGCTTGAATCAGTTCCAAGAGCAGA ACCTCCCTGCTTTCTTGTTTTCTCTCTCTGGTGAGCTTGCCAATGAAGATAAACCTGCTGATAGCCGCAGATTAGCTGGTTTGATGTTGAAAAATGCACT GGATGCTAAGGAGCAGCATAGGAAGTTTGAGCTTGTTCAGAGATGGTTGATGTTGGATGCTACTGTAAAGGCTCAGATAAAAACATGCTTGTTGAAGACA CTCTCTTCTCTTGTACCTGATGCTCGTAAACCTGCAGCTCAAGTAATTGCCAAAGTTGCTGGAATTGAGCTCCCCCAGAAACAGTGGCCTGAACTGATTG GATCCCTTTTGTCGAATGTTCATCAGCTACCTGCTCATGTCAAGGAAGCAACATTGGAGACTCTTGGGTATTTGTGCGAGGAAGTTTCTCCGGATGCTGT GGATCAAGATAACGTGAATAAAATCTTGACTGTTGTTGTTCAAGGAATGAGTTCTTCCGAAGTGAATACTGATGTCAGATTGGCTGCTATTCAAGCATTA TATAATGCACTGAGCTTTGCTCAAGCAAATTTCAGCAATGACATGGAACGTGATTATATCATGAGAGTTGTCTGTGAGGCTGCTTTGTCGAAAGAATTGA AGATCCGCCTAGCAGCTTTTGAATGTTTGGTGTCTATTGCATCAATGTACTATGAGAAGTTAACTCCATATATGCAAGATATCTTCACAATCACATCAAA AGCCGTGAGGGAAGATGAAGAAGATGTAGCTCTCCAGGCAATTGAATTCTGGAATTCAATTTGTGATGAAGAGATAGACATATTAGAAGAGTACGGGGTC GAGTTTACTGGGGACTCAGATGCAGTTCAATGCTCCTATTTTGTCAAGCAGGCTTTGACTGTTCTTGTACCAATTTTGTTGGAAACACTTTTGAAGCAAG AGGAAGACCAAGACAAAGATGACACTGCTTGGAATATTGCAATGGCAGGTGGAACATGTCTTGGGCTTGTTGCACGTACTGTGGGAGATGATATTGTTCC CCTTGTTATGCCATTCATTGAAGAGAACATAACAAAACCTGATTGGAGGCAAAGAGAGGCAGCTACTTATGCTTTTGGGTCAATTTTGGAAGGTCCTTCT CCAGACAAGTTGACACCGATTGTTAATGTTGCTTTGAACTTCATGTTAACAGCTTTAACAAAGGACCTGAATACTCATGTAAAAGATACCACTGCCTGGA CTCTTGGGCGTATCTTTGAGTTTCTTCATGGTTCAACAATGGATGCACCAATCATTACGCAGGCAAATTGCCAACAAATAATTACTGTACTACTCCAAAG TATGAGTGATGCGCCAAATGTGGCTGGGAAGGCTTGTGGGGCACTATATTTTCTTGCTCAGGGTTATGAAGATGTGGGCCCATCATCTCCTTTGACCCCA TACTTCCAGGATATTGTACAGGCACTTCTCACGGTCACTCATCGGAAAGATGCAGATGATCGGCTAAAGACGGCTGCCTATGAAACACTTAATGAAGTGG TTAGGTGTTCAACAGACGAAACTACTCCTACGGTGTTGCAACTTGTTCCTGTGATAATGATGGAACTTCACAATACACTCGAGGGTCAGAACCTTTCATC TGATGAGAGGGAGAAACAACAAGGGCTTCTTTGTGGGTGTTTACAGGTCCTTGTTCAGAAGCTTAGCTCGGCGGAGTCAACTAAGTATTCGTTTATGCAG TATGCAGACCAGATAATGGGTCTGTTCCTTAGGGTGTTTGCTTCTAAAAGCGCAACTGTGCATGAGGAGGCCGTGCTTGCTATTGGAGCCCTTGCCTATG CATGTGGCCCAGAATTTGACAAGTACATGCCGGAACTCTACAAGTACTTGGAGATCGGCCTTCAAAATTTTGAAGAATACCAGGTGTGTGCTGTTACTGT TGGAGTGGTAGGCGATATTTGCAGGGCGTTGGAAAATAAAGTTCTACCTTATTGTGACGGGATCATGACACAGCTTCTGAAGGATTTGTCAAGCAATCAG TTGCATCGATCCGTTAAGCCCCCTATATTCTCCTGCCTTGGCGACGTTGCACTGGCAATAGGCCAAGACTTTGAAAAATATCTGATGTACGCCATGCCAA TGCTCCAAAGTGCTGCCGAATTGTCTGCTCATACTACAGGTGCTGATGATGACATGGTCGAATATACGAATTCTCTCAGAAACGGAATCTTGGAGGCTTA TTCTGGAATATTTCAAGGGTTTAAGAACTCAACTAAAACCCAGCTGTTGATTCCTTATGCACCACACATTCTCCAGTTCTTGGATAGCATATACATGGAG AAAGACATGGATGATTTAGTGATGAAAACAGCTATTGGAGTACTTGGAGACTTGGCAGACACACTTGGAAGCAATGCTGGAACTATGATACAGAATTCTC TCTCAAGCAGGGACTTCTTAAACGAATGCTTATCTTCGGAAGATGGTTCGATAAAGGAATCTGCTGAATGGACGAGGCTAGCGATCACTCGTGCCATATC TGCTTGA
AA sequence Show only first row Show all	>Lus10008863 pacid=23144259 polypeptide=Lus10008863 locus=Lus10008863.g ID=Lus10008863.BGIv1.0 annot-version=v1.0 MAMEVTQVLLNAQSIDRNVQKQAEESLNQFQEQNLPAFLFSLSGELANEDKPADSRRLAGLMLKNALDAKEQHRKFELVQRWLMLDATVKAQIKTCLLKT LSSLVPDARKPAAQVIAKVAGIELPQKQWPELIGSLLSNVHQLPAHVKEATLETLGYLCEEVSPDAVDQDNVNKILTVVVQGMSSSEVNTDVRLAAIQAL YNALSFAQANFSNDMERDYIMRVVCEAALSKELKIRLAAFECLVSIASMYYEKLTPYMQDIFTITSKAVREDEEDVALQAIEFWNSICDEEIDILEEYGV EFTGDSDAVQCSYFVKQALTVLVPILLETLLKQEEDQDKDDTAWNIAMAGGTCLGLVARTVGDDIVPLVMPFIEENITKPDWRQREAATYAFGSILEGPS PDKLTPIVNVALNFMLTALTKDLNTHVKDTTAWTLGRIFEFLHGSTMDAPIITQANCQQIITVLLQSMSDAPNVAGKACGALYFLAQGYEDVGPSSPLTP YFQDIVQALLTVTHRKDADDRLKTAAYETLNEVVRCSTDETTPTVLQLVPVIMMELHNTLEGQNLSSDEREKQQGLLCGCLQVLVQKLSSAESTKYSFMQ YADQIMGLFLRVFASKSATVHEEAVLAIGALAYACGPEFDKYMPELYKYLEIGLQNFEEYQVCAVTVGVVGDICRALENKVLPYCDGIMTQLLKDLSSNQ LHRSVKPPIFSCLGDVALAIGQDFEKYLMYAMPMLQSAAELSAHTTGADDDMVEYTNSLRNGILEAYSGIFQGFKNSTKTQLLIPYAPHILQFLDSIYME KDMDDLVMKTAIGVLGDLADTLGSNAGTMIQNSLSSRDFLNECLSSEDGSIKESAEWTRLAITRAISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	0	1
AT5G53480			ARM repeat superfamily protein...		Lus10008864 [exp]	1.0	0.9535
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	3.0	0.9013
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	4.2	0.9029
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	4.9	0.8963
AT4G24840			unknown protein		Lus10009908 [exp]	7.3	0.8885
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10023306 [exp]	8.9	0.8556
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	9.5	0.8918
AT5G11040		AtTRS120	TRS120 (.1)		Lus10008127 [exp]	10.2	0.8815
AT3G58640			Mitogen activated protein kina...		Lus10033608 [exp]	12.7	0.8509
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10027157 [exp]	12.8	0.8160

Compare expression of checked genes

Lus10008863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.