Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53480 1407 / 0 ARM repeat superfamily protein (.1) AT3G08947 987 / 0 ARM repeat superfamily protein (.1) AT3G08943 961 / 0 ARM repeat superfamily protein (.1) AT2G16950 100 / 2e-21 ATTRN1 transportin 1 (.1.2) AT2G16960 71 / 1e-12 ARM repeat superfamily protein (.1.2) AT5G19820 66 / 1e-10 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT4G27640 52 / 3e-06 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008863 [exp] 1746 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 1728 / 0 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1) Lus10041453 [exp] 1318 / 0 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10034318 [exp] 1316 / 0 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1) Lus10023247 [exp] 580 / 0 AT5G53480 509 / 3e-172 ARM repeat superfamily protein (.1) Lus10031905 [exp] 115 / 4e-30 AT5G53480 106 / 7e-28 ARM repeat superfamily protein (.1) Lus10014540 [exp] 86 / 7e-19 AT5G53480 106 / 1e-26 ARM repeat superfamily protein (.1) Lus10023999 [exp] 82 / 1e-15 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10025083 [exp] 80 / 4e-15 AT2G16950 1392 / 0.0 transportin 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010400 [exp] 1504 / 0 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.012G017500 [exp] 1495 / 0 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.006G103300 [exp] 1019 / 0 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1) Potri.016G123600 [exp] 1001 / 0 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1) Potri.009G138200 [exp] 79 / 1e-14 AT2G16950 1316 / 0.0 transportin 1 (.1.2) Potri.004G177700 [exp] 72 / 9e-13 AT2G16950 1279 / 0.0 transportin 1 (.1.2) Potri.001G004800 [exp] 54 / 5e-07 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 53 / 1e-06 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10008864 pacid=23144250 polypeptide=Lus10008864 locus=Lus10008864.g ID=Lus10008864.BGIv1.0 annot-version=v1.0 ATGGCTATGGAGGTGACACAGGTGCTTCTGAATGCACAATCGATAGATCGCAATGTTCAGAAGCAAGCTGAGGAGAGCTTGAATCAGTTCCAAGAGCAGA ACCTCCCTGCTTTCTTGTTTTCTCTCTCTGGTGAGCTTGCCAATGAAGATAAACCTGCTGATAGCCGCAGATTAGCTGGTTTGATGTTGAAAAATGCACT GGATGCTAAGGAGCAGCATAGGAAGTTTGAGCTTGTTCAGAGATGGTTGATGTTGGATGCTACTGTAAAGGCTCAGATAAAAACATGCTTGTTGAAGACA CTCTCTTCTCTTGCACCTGATGCTCGTAAACCTGCAGCTCAAGTAATTGCCAAAGTTGCTGGAATTGAGCTCCCCCAGAAACAGTGGCCTGAACTGATTG GATCCCTTTTGTCGAATGTTCATCAGCTACCTGCTCATGTCAAGGAAGCAACCTTGGAGACTCTTGGGTATCTGTGCGAGGAAGTTTCTCCGGATGCTGT GGATCAGGATAACGTGAATAAAATCTTGACTGTTGTTGTTCAAGGAATGAGTTCTTCCGAAGTGAATACTGATGTCAGACTGGCTGCTATTCAAGCATTA TATAATGCACTGAGCTTTGCTCAAGCAAATTTCAGCAATGACATGGAACGTGATTATATCATGAGAGTTGTCTGTGAGGCTGCTTTGTCGAAAGAATTGA AGATCCGCCTAGCAGCTTTTGAATGTTTGGTGTCTATTGCATCAATGTACTATGAGAAGTTAACTCCATATATGCAAGATATCTTCACAATCACATCAAA AGCCGTGAGGGAAGATGAAGAAGATGTAGCTCTCCAGGCAATTGAATTCTGGAATTCAATTTGTGATGAAGAGATAGACATATTAGAAGAGTACGGGGTC GAGTTTACTGGGGACTCAGATGCAGTTCAATGCTCCTATTTTGTCAAGCAGGCTTTGACTGTTCTTGTACCAATTTTGTTGGAAACACTTTTGAAGCAAG AGGAAGACCAAGACAAAGATGACACTGCTTGGAATATTGCAATGGCAGGTGGAACATGTCTTGGGCTTGTTGCACGTACTGTGGGAGATGATATTGTTCC CCTTGTTATGCCATTCATTGAAGAGAACATAACAAAACCTGATTGGAGGCAAAGAGAGGCAGCTACTTATGCTTTTGGGTCAATTTTGGAAGGTCCTTCT CCAGACAAGTTGACACCGATTGTTAATGTTGCTTTGAACTTCATGTTAACAGCTTTAACAAAGGACCTGAATACTCATGTAAAAGATACCACTGCCTGGA CTCTTGGGCGTATCTTTGAGTTTCTTCATGGTTCAACGATGGATGCACCAATCATTACGCAGGCCAATTGCCAACAAATAATTACTGTACTACTCCAAAG TATGAGTGATGCGCCAAATGTGGCTGGGAAGGCTTGTGGGGCACTATACTTTCTTGCTCAGGGTTATGAAGATGTGGGCCCATCATCTCCTTTGACCCCA TACTTCCAGGATATTGTACAGGCACTTCTCACGGTCACTCATCGGAAAGATGCAGATGATCGGCTAAAGACAGCTGCCTATGAAACACTTAATGAAGTGG TTAGGTGTTCAACAGACGAAACTACTCCTATGGTGTTGCAACTTGTTCCTGTGATAATGATGGAACTTCACAATACACTCGAGGGTCAGAACCTTTCATC TGATGAGAGGGAGAAACAACAAGGGCTTCTTTGTGGGTGTTTACAGGTCCTTGTTCAGAAGCTTAGCTCGTCGGAGTCAACTAAGTATTCGTTTATGCAG TATGCAGACCAGATAATGGGTCTGTTCCTTAGGGTGTTTGCTTCTAAAAGCGCAACTGTGCATGAGGAGGCCGTGCTTGCTATTGGAGCCCTTGCCTATG CATGTGGCCCAGAATTTGACAAGTACATGCCGGAACTCTACAAGTACTTGGAGATCGGCCTTCAAAATTTTGAAGAATACCAGGTGTGTGCTGTTACTGT TGGAGTGGTAGGCGATATTTGCAGGGCGTTGGAAAATAAAGTTCTACCTTATTGTGACGGGATCATGACACAGCTTCTGAAGGATTTGTCAAGCAATCAG TTGCATCGATCCGTTAAGCCCCCTATATTCTCCTGCCTTGGCGACGTTGCACTGGCAATAGGCCAAGACTTTGAAAAATATCTGATGTACGCCATGCCAA TGCTCCAAAGTGCTGCCGAATTGTCTGCTCATACTACAGGTGCTGATGACGACATGGTCGAATACACAAATTCTCTCAGAAATGGAATCCTGGAGGCCTA TTCTGGAATATTTCAAGGGTTTAAGAACTCAACTAAAACCCAACTGTTGATTCCTTATGCTCCACACATTCTCCAGTTCTTGGATAGCTTATACATGGAG AAAGATATGGATGATTTGGTGATGAAAACAGCTATTGGAGTACTTGGAGACTTGGCAGACACACTTGGAAGCAATGCCGGAACTATGATACAGAATTCTC TCTCTAGCAGAGACTTTTTGAATGAATGCTTATCTTCAGAAGACGGCTCGATAAAGGAATCTGCTGAATGGACGAAGCTGGCGATCACTCGTGCCATATC TGCTTGA
AA sequence Show only first row Show all	>Lus10008864 pacid=23144250 polypeptide=Lus10008864 locus=Lus10008864.g ID=Lus10008864.BGIv1.0 annot-version=v1.0 MAMEVTQVLLNAQSIDRNVQKQAEESLNQFQEQNLPAFLFSLSGELANEDKPADSRRLAGLMLKNALDAKEQHRKFELVQRWLMLDATVKAQIKTCLLKT LSSLAPDARKPAAQVIAKVAGIELPQKQWPELIGSLLSNVHQLPAHVKEATLETLGYLCEEVSPDAVDQDNVNKILTVVVQGMSSSEVNTDVRLAAIQAL YNALSFAQANFSNDMERDYIMRVVCEAALSKELKIRLAAFECLVSIASMYYEKLTPYMQDIFTITSKAVREDEEDVALQAIEFWNSICDEEIDILEEYGV EFTGDSDAVQCSYFVKQALTVLVPILLETLLKQEEDQDKDDTAWNIAMAGGTCLGLVARTVGDDIVPLVMPFIEENITKPDWRQREAATYAFGSILEGPS PDKLTPIVNVALNFMLTALTKDLNTHVKDTTAWTLGRIFEFLHGSTMDAPIITQANCQQIITVLLQSMSDAPNVAGKACGALYFLAQGYEDVGPSSPLTP YFQDIVQALLTVTHRKDADDRLKTAAYETLNEVVRCSTDETTPMVLQLVPVIMMELHNTLEGQNLSSDEREKQQGLLCGCLQVLVQKLSSSESTKYSFMQ YADQIMGLFLRVFASKSATVHEEAVLAIGALAYACGPEFDKYMPELYKYLEIGLQNFEEYQVCAVTVGVVGDICRALENKVLPYCDGIMTQLLKDLSSNQ LHRSVKPPIFSCLGDVALAIGQDFEKYLMYAMPMLQSAAELSAHTTGADDDMVEYTNSLRNGILEAYSGIFQGFKNSTKTQLLIPYAPHILQFLDSLYME KDMDDLVMKTAIGVLGDLADTLGSNAGTMIQNSLSSRDFLNECLSSEDGSIKESAEWTKLAITRAISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53480			ARM repeat superfamily protein...		Lus10008864 [exp]	0	1
AT5G53480			ARM repeat superfamily protein...		Lus10008863 [exp]	1.0	0.9535
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	2.8	0.9207
AT5G65620			Zincin-like metalloproteases f...		Lus10019236 [exp]	4.5	0.8684
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	7.5	0.9142
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	7.7	0.8871
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	8.2	0.9133
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	8.5	0.9050
AT5G22780			Adaptor protein complex AP-2, ...		Lus10005371 [exp]	11.8	0.9052
AT2G21390			Coatomer, alpha subunit (.1)		Lus10025780 [exp]	11.8	0.9010
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10010295 [exp]	14.1	0.8518

Compare expression of checked genes

Lus10008864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.