Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24318 517 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 376 / 1e-126 O-Glycosyl hydrolases family 17 protein (.1) AT3G55430 352 / 4e-118 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 350 / 3e-116 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 321 / 7e-106 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 320 / 2e-105 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 319 / 7e-105 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 317 / 2e-103 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G39640 311 / 7e-101 glycosyl hydrolase family 17 protein (.1) AT3G46570 300 / 1e-98 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023245 [exp] 793 / 0 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 404 / 4e-138 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10040808 [exp] 400 / 6e-136 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10016539 [exp] 397 / 1e-134 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 387 / 2e-131 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 351 / 4e-117 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012080 [exp] 351 / 4e-117 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 348 / 3e-116 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004391 [exp] 340 / 6e-113 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G017800 [exp] 565 / 0 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.015G010100 [exp] 445 / 3e-155 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.001G240000 [exp] 445 / 9e-154 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G056000 [exp] 407 / 2e-139 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G055900 [exp] 397 / 1e-135 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 383 / 7e-130 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 371 / 2e-125 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 364 / 2e-122 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G007300 [exp] 342 / 1e-113 AT4G29360 339 / 1e-111 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G224600 [exp] 335 / 6e-111 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10008865 pacid=23144244 polypeptide=Lus10008865 locus=Lus10008865.g ID=Lus10008865.BGIv1.0 annot-version=v1.0 ATGGCTTTCAATCCTCCAACATTCCTCACTTGTCTCTTCATTCTATTTCCACTCATCTCCGGTGCTGAAGGGAGCATCGGAGTCAACTACGGCGACGACC TCCCTCCGCCGTCCGACGTGGCCCGCTTCCTCCTCCAATCCACCCTCATCAACCGGGTCCGGATCTTCGAACCCAACCCGGAACTAATCCGAGCTTTCGC CCACACTGGAATCCGACTCACACTCACCATCCCAAACCACCAAATCCCTAAACTCTCCGCCAACTTCACCTTCGCCCAACAATGGCTCCATTCCTACGTC GTCCCTTTCCTCCCGCCGACCAACATTGTCCGGATCCTCGTTGGCAACGAAGTCTTCTCCCCCGCCAACAAACTCCTCATCGATAGCCTCGTCCCAGCGA TGCGGACCCTCCATGCTGCCTTGGTCCAATCGTCGCTGGACCGTCGGATTCAGATATCCACTCCTCACTCGCTCGGAATCCTCTCCGATTCCTCCCCTCC TGCTGGAAAATTCCACCGCGGATACGACATTCATATCCTCAAGCCATTGGTCACTTTCCTTAGATCGACAAATTCCCCTTTCATGATCAATCCTTATCCC TTCTTCGGATGCTGCTCTGATATGGCCAGTCGGGATTACGCTCTGTTTCGACCTAATCCAGGAGTTCTCGACGATAACAGGAAGCTTCGATACACAAACA TGCTGGACGCCCAGCTTGACGCTGTTTTCTCCGCCATGAAATCGCTAGGGTTCGCAGGTCTGGAGATTGCGATCCCCAAGACCGGATGGCCATCCAAAGG CGATCCGTCACAGATAGGCGCTGGGATTGAGAACGCAGCTCTGTACAATCGGAATCTGATACAGCATGTGAATTCAGGAGTAGGGACGCCATTGATGCCC AATCGGAGCTTCGAGACCTACATCTTCGGTCTATTCAACGAGGATAGGAAACCTGGGCCTGCCTATGAGAGGAGCTTCGGCTTGTTCAATCCTGACTTGT CACCGGAGTATGACGTCAGGAACCTCCGCCCGATGGTTTCGCGGCAATCGTCGGAGAACTCTCCAGGGAAGTGGTGTGTGTCGAAAGAAGGGGCGGATGT CAGAGTCTTGCAGAGGAACATTGACTATGTGTGTGGAACGGCAGCGGCCATGGGTTCATATTGGTGTCGGCCGATACAAGAAGGCGGAGAGTGCTTTTTA CCGGATACAGTTGGGGCACACGCATCGTTCGCCATGAATGCGTTCTATCAAGCAATGGGGAGGAACGACTATGACTGCGAGTTCCGGCAGACTGGGGAAA TCACCACCGTCGATCCACGTCTTTGTAAACCATAA
AA sequence Show only first row Show all	>Lus10008865 pacid=23144244 polypeptide=Lus10008865 locus=Lus10008865.g ID=Lus10008865.BGIv1.0 annot-version=v1.0 MAFNPPTFLTCLFILFPLISGAEGSIGVNYGDDLPPPSDVARFLLQSTLINRVRIFEPNPELIRAFAHTGIRLTLTIPNHQIPKLSANFTFAQQWLHSYV VPFLPPTNIVRILVGNEVFSPANKLLIDSLVPAMRTLHAALVQSSLDRRIQISTPHSLGILSDSSPPAGKFHRGYDIHILKPLVTFLRSTNSPFMINPYP FFGCCSDMASRDYALFRPNPGVLDDNRKLRYTNMLDAQLDAVFSAMKSLGFAGLEIAIPKTGWPSKGDPSQIGAGIENAALYNRNLIQHVNSGVGTPLMP NRSFETYIFGLFNEDRKPGPAYERSFGLFNPDLSPEYDVRNLRPMVSRQSSENSPGKWCVSKEGADVRVLQRNIDYVCGTAAAMGSYWCRPIQEGGECFL PDTVGAHASFAMNAFYQAMGRNDYDCEFRQTGEITTVDPRLCKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	0	1
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	2.8	0.9125
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	3.5	0.9014
					Lus10007802 [exp]	5.8	0.9064
AT5G35390			Leucine-rich repeat protein ki...		Lus10022946 [exp]	6.8	0.8021
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10026653 [exp]	8.1	0.8843
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	9.8	0.8897
					Lus10023010 [exp]	11.0	0.8812
AT2G39210			Major facilitator superfamily ...		Lus10021513 [exp]	11.4	0.8428
AT5G04910			unknown protein		Lus10028878 [exp]	13.0	0.8705
AT2G34930			disease resistance family prot...		Lus10001035 [exp]	14.4	0.8775

Compare expression of checked genes

Lus10008865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.