Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27700 245 / 1e-82 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT2G21045 47 / 2e-06 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G66040 45 / 3e-06 STR16 sulfurtransferase protein 16 (.1.2) AT3G08920 46 / 5e-06 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT5G66170 44 / 1e-05 STR18 sulfurtransferase 18 (.1.2.3) AT2G17850 42 / 4e-05 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT4G35770 43 / 5e-05 ATSEN1, DIN1, SEN1 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) AT4G24750 40 / 0.0006 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023243 [exp] 352 / 2e-124 AT4G27700 305 / 7e-106 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10041525 [exp] 57 / 1e-09 AT5G14030 216 / 8e-70 translocon-associated protein beta (TRAPB) family protein (.1), translocon-associated protein beta (TRAPB) family protein (.2), translocon-associated protein beta (TRAPB) family protein (.3), translocon-associated protein beta (TRAPB) family protein (.4) Lus10012566 [exp] 54 / 6e-09 AT5G66040 129 / 1e-39 sulfurtransferase protein 16 (.1.2) Lus10005635 [exp] 49 / 4e-07 AT5G66040 144 / 1e-44 sulfurtransferase protein 16 (.1.2) Lus10028390 [exp] 49 / 5e-07 AT4G35770 182 / 3e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Lus10004811 [exp] 47 / 4e-06 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10041843 [exp] 46 / 5e-06 AT4G35770 182 / 6e-59 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Lus10002485 [exp] 46 / 7e-06 AT3G08920 239 / 3e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10041894 [exp] 44 / 2e-05 AT5G66170 120 / 1e-35 sulfurtransferase 18 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G020700 [exp] 274 / 9e-94 AT4G27700 262 / 4e-89 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G008000 [exp] 272 / 6e-93 AT4G27700 268 / 2e-91 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.002G014900 [exp] 54 / 9e-09 AT4G35770 151 / 8e-47 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.006G100600 [exp] 54 / 1e-08 AT3G08920 238 / 6e-80 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G106400 [exp] 48 / 1e-06 AT4G35770 199 / 1e-64 SENESCENCE ASSOCIATED GENE 1, DARK INDUCIBLE 1, ARABIDOPSIS THALIANA SENESCENCE 1, Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2.3) Potri.014G131300 [exp] 47 / 1e-06 AT2G21045 204 / 2e-68 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G086100 [exp] 41 / 0.0003 AT4G24750 416 / 1e-147 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10008866 pacid=23144264 polypeptide=Lus10008866 locus=Lus10008866.g ID=Lus10008866.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGCTGCTGCTGCTGTACTTCCTTCAATCCCATCTCCATCTTCTTCTTCTTCTTCTTCTTCAACGAGTTTTTCTCATTCCAAGCCATCTG CTCCATCTACCTTCTTCACTCTCAGACCCTACCGAAGAATCGAAGGAAACCTCTCAAACTCTCGCCACTCTGTTCCAAAAATCCTGTGTGCAGCTACAAA GACTGCAAAGTCTCCAACTGAAGAAGAGTGGAAGGTCAAGAGGGAGTTACTTCTGCAGAAAAAAGTCAGGAGTGTAGAAGTGAAGGAAGCTCTTCGGCTT CAGAAGGAGAACAACTTTGTTATCCTTGATGTCAGACCAGAAGCTGAATTCAAAGAGGCTCATCCACCGGATGCAATCAATGTCCAAATATACAGACTTA TAAAGGAGTGGACGGCCTGGGATATCGCCAGGCCTATGGAATCCAAACTTAGTAAAGATTCGAAGATTATCGTGGCTTGCTCAGCAGGAGGTACAATGAA ACCGTCGCAAAATCTACCTGAAGGTCAGCAATCCAGATCATTGATAGCAGCGTACCTGTTAGTCCTCAATGGTTATAAGAACGTCTTCCATTTAGAAGGT GGTCTGTATACGTGGTTCAAAGAGGGGTTGCCGGCGGTTGGTGAAGAAGAGTGA
AA sequence Show only first row Show all	>Lus10008866 pacid=23144264 polypeptide=Lus10008866 locus=Lus10008866.g ID=Lus10008866.BGIv1.0 annot-version=v1.0 MAAAAAAAVLPSIPSPSSSSSSSSTSFSHSKPSAPSTFFTLRPYRRIEGNLSNSRHSVPKILCAATKTAKSPTEEEWKVKRELLLQKKVRSVEVKEALRL QKENNFVILDVRPEAEFKEAHPPDAINVQIYRLIKEWTAWDIARPMESKLSKDSKIIVACSAGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVFHLEG GLYTWFKEGLPAVGEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27700			Rhodanese/Cell cycle control p...		Lus10008866 [exp]	0	1
AT4G27700			Rhodanese/Cell cycle control p...		Lus10023243 [exp]	1.4	0.9581
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Lus10014135 [exp]	3.7	0.9506
AT1G64355			unknown protein		Lus10003895 [exp]	5.5	0.9317
AT4G01150			unknown protein		Lus10003031 [exp]	5.7	0.9427
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	13.0	0.9289
AT1G12250			Pentapeptide repeat-containing...		Lus10032239 [exp]	13.1	0.9346
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10036913 [exp]	13.2	0.9101
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Lus10023782 [exp]	13.4	0.9176
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10008747 [exp]	13.8	0.9344
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10002055 [exp]	14.8	0.8462

Compare expression of checked genes

Lus10008866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.